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AT5G11250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G14080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AL360314EMBL:CP002688EnsemblPlants:AT5G11250EnsemblPlants:AT5G11250.1entrez:830995
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:830995GO:GO:0007165GO:GO:0043531GO:GO:0080135
Gramene:AT5G11250.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713
InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT5G11250OMA:NDCSMLKPfam:PF00931Pfam:PF01582
Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9LFN1PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_196686.1SMART:SM00255
SMR:Q9LFN1STRING:3702.AT5G11250.1SUPFAM:SSF46785SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT5G11250UniGene:At.54815UniProt:Q9LFN1
Coordinates (TAIR10) chr5:-:3587978..3591960
Molecular Weight (calculated) 134227.00 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.09
Length 1189 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSFFLTTV AAAIGFFTLL RKLRFHHDNK EKKSTSLSPS SSPSSLSPSS VPPPSSSCIW THQVFPSFSG EDVRRDFLSH IQMEFQRMGI TPFVDNEIKR
0101: GESIGPELLR AIRGSKIAII LLSRNYASSK WCLDELVEIM KCREEYGQTV MAIFYKVDPS DVKNLTGDFG KVFRKTCAGK PKKDIGRWRQ AWEKVATVAG
0201: YHSINWDNEA AMIKKIATDI SNILINSTPS RDFDGLVGMR AHLEKMKPLL CLDTDEVRII GIWGPPGIGK TTIARVVYNQ LSHSFQLSVF MENIKANYTR
0301: PTGSDDYSAK LQLQQMFMSQ ITKQKDIEIP HLGVAQDRLK DKKVLVVLDG VNQSVQLDAM AKEAWWFGPG SRIIITTQDQ KLFRAHGINH IYKVDFPPTE
0401: EALQIFCMYA FGQNSPKDGF QNLAWKVINL AGNLPLGLRI MGSYFRGMSR EEWKKSLPRL ESSLDADIQS ILKFSYDALD DEDKNLFLHI ACFFNGKEIK
0501: ILEEHLAKKF VEVRQRLNVL AEKSLISFSN WGTIEMHKLL AKLGGEIVRN QSIHEPGQRQ FLFDGEEICD VLNGDAAGSK SVIGIDFHYI IEEEFDMNER
0601: VFEGMSNLQF LRFDCDHDTL QLSRGLSYLS RKLQLLDWIY FPMTCLPSTV NVEFLIELNL THSKLDMLWE GVKPLHNLRQ MDLSYSVNLK ELPDLSTAIN
0701: LRKLILSNCS SLIKLPSCIG NAINLEDLDL NGCSSLVELP SFGDAINLQK LLLRYCSNLV ELPSSIGNAI NLRELDLYYC SSLIRLPSSI GNAINLLILD
0801: LNGCSNLLEL PSSIGNAINL QKLDLRRCAK LLELPSSIGN AINLQNLLLD DCSSLLELPS SIGNATNLVY MNLSNCSNLV ELPLSIGNLQ KLQELILKGC
0901: SKLEDLPINI NLESLDILVL NDCSMLKRFP EISTNVRALY LCGTAIEEVP LSIRSWPRLD ELLMSYFDNL VEFPHVLDII TNLDLSGKEI QEVPPLIKRI
1001: SRLQTLILKG YRKVVSLPQI PDSLKWIDAE DCESLERLDC SFHNPEITLF FGKCFKLNQE ARDLIIQTPT KQAVLPGREV PAYFTHRASG GSLTIKLNER
1101: PLPTSMRYKA CILLVRIGDY GAHDRDKWLH VAFGVRSTTL GHIIYSGLTE HLYTFEIEEK VTSSELVFEF KVENGNHWKI GECGLRQLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)