suba logo
AT5G11210.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.952
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 2.5
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 2.5 (GLR2.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.6 (TAIR:AT5G11180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQQVeggNOG:KOG1052EMBL:AL360314EMBL:CP002688EnsemblPlants:AT5G11210EnsemblPlants:AT5G11210.1entrez:830991
ExpressionAtlas:M4GUZ8ExpressionAtlas:Q9LFN5GeneID:830991Genevisible:Q9LFN5GO:GO:0004930GO:GO:0004970GO:GO:0005262
GO:GO:0005622GO:GO:0005886GO:GO:0006816GO:GO:0008066GO:GO:0016021GO:GO:0019722GO:GO:0070588
GO:GO:0071230Gramene:AT5G11210.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF204HOGENOM:HOG000239558InParanoid:Q9LFN5InterPro:IPR000337
InterPro:IPR001320InterPro:IPR001638InterPro:IPR001828InterPro:IPR017103InterPro:IPR028082KEGG:ath:AT5G11210KO:K05387
PaxDb:Q9LFN5Pfam:PF00060Pfam:PF00497Pfam:PF01094Pfam:Q9LFN5PhylomeDB:Q9LFN5PIRSF:PIRSF037090
PRINTS:PR00248PRO:PR:Q9LFN5ProteinModelPortal:Q9LFN5Proteomes:UP000006548RefSeq:NP_196682.1SMART:SM00079SMR:Q9LFN5
STRING:3702.AT5G11210.1SUPFAM:SSF53822SUPFAM:SSF53850TAIR:AT5G11210tair10-symbols:ATGLR2.5tair10-symbols:GLR2.5TMHMM:TMhelix
UniGene:At.49415UniProt:M4GUZ8UniProt:Q9LFN5
Coordinates (TAIR10) chr5:-:3571214..3574537
Molecular Weight (calculated) 93475.40 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.05
Length 829 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRQGLSST SETPNKLLLV LPLQKREVVA IIGPGTSMQA PFLINLGNQS KVPIISFSAT SPLLDSLRSP YFIRATHDDS SQVQAISAII ESFRWREVVP
101: IYVDNEFGEG ILPNLVDAFQ EINVRIRYRS AISLHYSDDQ IKKELYKLMT MPTRVFIVHM LPDLGSRLFS IAKEIDMLSK GYVWIVTNGI ADLMSIMGES
201: SLVNMHGVLG VKTYFAKSKE LLHLEARWQK RFGGEELNNF ACWAYDAATA LAMSVEEIRH VNMSFNTTKE DTSRDDIGTD LDELGVALSG PKLLDALSTV
301: SFKGVAGRFQ LKNGKLEATT FKIINIEESG ERTVGFWKSK VGLVKSLRVD KVSHSSRRLR PIIWPGDTIF VPKGWEFPTN AKKLRIAVPK KDGFNNFVEV
401: TKDENTNVPT VTGFCIDVFN TVMSQMPYAV SYEYIPFDTP DGKPRGSYDE MVYNVFLGEF DGAVGDTTIL ANRSHYVDFA LPYSETGIVF LVPVKDGKEK
501: GEWVFLKPLT KELWLVTAAS FLYIGIMVWI FEYQADEEFR EQMIIDKISS VFYFSFSTLF FAHRRPSESF FTRVLVVVWC FVLLILTQSY TATLTSMLTV
601: QELRPTVRHM DDLRKSGVNI GYQTGSFTFE RLKQMRFDES RLKTYNSPEE MRELFLHKSS NGGIDAAFDE VAYIKLFMAK YCSEYSIIEP TFKADGFGFA
701: FPLGSPLVSD ISRQILNITE GDAMKAIENK WFLGEKHCLD STTSDSPIQL DHHSFEALFL IVFVVSVILL LLMLASRGYQ ERQHNASPNL PNDQANAAQE
801: EVNEEGNVGD HIVEVDTALA KVSIVKPKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)