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AT5G11150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : vacuole 15876431
SwissProt : plasma membrane 16381842
TAIR : vacuole 14760709
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15342965 (2004): plant-type vacuole
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vesicle-associated membrane protein 713
Curator
Summary (TAIR10)
Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
Computational
Description (TAIR10)
vesicle-associated membrane protein 713 (VAMP713); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuolar membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 711 (TAIR:AT4G32150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16262eggNOG:COG5143eggNOG:KOG0859EMBL:AL360314EMBL:AY091002EMBL:AY122934EMBL:CP002688
EnsemblPlants:AT5G11150EnsemblPlants:AT5G11150.1entrez:830984Gene3D:1.10.3840.10Gene3D:3.30.450.50GeneID:830984Genevisible:Q9LFP1
GO:GO:0000149GO:GO:0005484GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0006906GO:GO:0009651
GO:GO:0015031GO:GO:0016021GO:GO:0031902Gramene:AT5G11150.1hmmpanther:PTHR21136hmmpanther:PTHR21136:SF104HOGENOM:HOG000042711
InParanoid:Q9LFP1IntAct:Q9LFP1InterPro:IPR001388InterPro:IPR010908InterPro:IPR011012KEGG:ath:AT5G11150KO:K08515
OMA:AMAFVCHPaxDb:Q9LFP1Pfam:PF00957Pfam:PF13774Pfam:Q9LFP1Pfscan:PS50859Pfscan:PS50892
PhylomeDB:Q9LFP1PRIDE:Q9LFP1PRINTS:PR00219PRO:PR:Q9LFP1PROSITE:PS00417PROSITE:PS50859PROSITE:PS50892
ProteinModelPortal:Q9LFP1Proteomes:UP000006548RefSeq:NP_196676.1scanprosite:PS00417SMART:SM01270SMR:Q9LFP1STRING:3702.AT5G11150.1
SUPFAM:SSF58038SUPFAM:SSF64356TAIR:AT5G11150tair10-symbols:ATVAMP713tair10-symbols:VAMP713TMHMM:TMhelixUniGene:At.5977
UniProt:Q9LFP1
Coordinates (TAIR10) chr5:-:3546625..3547844
Molecular Weight (calculated) 25321.70 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.16
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)