suba logo
AT5G11110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sucrose phosphate synthase 2F
Curator
Summary (TAIR10)
Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.
Computational
Description (TAIR10)
sucrose phosphate synthase 2F (SPS2F); FUNCTIONS IN: sucrose-phosphate synthase activity; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose synthase (InterPro:IPR000368), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 1F (TAIR:AT5G20280.1); Has 7063 Blast hits to 6941 proteins in 1362 species: Archae - 321; Bacteria - 4772; Metazoa - 8; Fungi - 55; Plants - 761; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0438eggNOG:KOG0853EMBL:KJ138698EnsemblPlants:AT5G11110
EnsemblPlants:AT5G11110.1entrez:830979ExpressionAtlas:W8QNB0GeneID:830979
GO:GO:0005985GO:GO:0016157GO:GO:0046524Gramene:AT5G11110.1
gramene_pathway:2.4.1.14gramene_pathway:PWYQT-4467gramene_pathway:SUCSYN-PWYhmmpanther:PTHR12526
hmmpanther:PTHR12526:SF343InterPro:IPR000368InterPro:IPR001296InterPro:IPR006380
InterPro:IPR012819InterPro:IPR023214KEGG:00500+2.4.1.14KEGG:ath:AT5G11110
KO:K00696ncoils:CoilOMA:TISETHTPaxDb:W8QNB0
Pfam:PF00534Pfam:PF00862Pfam:PF05116Pfam:Q9FY54
PhylomeDB:W8QNB0ProteinModelPortal:W8QNB0RefSeq:NP_196672.3SMR:W8QNB0
STRING:3702.AT5G11110.1SUPFAM:SSF53756SUPFAM:SSF56784tair10-symbols:ATSPS2F
tair10-symbols:KNS2tair10-symbols:SPS1tair10-symbols:SPS2FTIGRfam:TIGR02468
TIGRFAMs:TIGR02468UniGene:At.28444unipathway:UPA00371UniProt:Q9FY54
UniProt:W8QNB0
Coordinates (TAIR10) chr5:+:3536426..3540901
Molecular Weight (calculated) 116973.00 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.44
Length 1047 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVGNDWVNSY LEAILAAEPG IANSKPPGTG DSKSSLLLRE RGHFSPTRYF VEEVITGFDE TDLHRSWVQA AATRSPQERN TRLENLCWRI WNLARQKKQV
0101: EGKNAKREAK REREREKARR EVTAEMSEDF SEGEKADLPG EIPTPSDNNT KGRMSRISSV DVFENWFAQH KEKKLYIVLI SLHGLIRGEN MELGRDSDTG
0201: GQVKYVVELA RALGSMPGVY RVDLLTRQVT APDVDSSYSE PSEMLNPIDT DIEQENGESS GAYIIRIPFG PKDKYVPKEL LWPHIPEFVD RALSHIMQIS
0301: KVLGEQIGGG QQVWPVSIHG HYADAGDSTA LLSGALNVPM VFTGHSLGRD KLEQLLKQGR PKEEINSNYK IWRRIEAEEL CLDASEIVIT STRQEVDEQW
0401: RLYDGFDPVL ERKLRARMKR GVSCLGRFMP RMVVIPPGME FHHIVPHDVD ADGDDENPQT ADPPIWSEIM RFFSNPRKPM ILALARPDPK KNLVTLVKAF
0501: GECRPLRELA NLTLIMGNRN DIDELSSTNS SVLLSILKLI DKYDLYGQVA MPKHHQQSDV PEIYRLAAKT KGVFINPAFI EPFGLTLIEA GAHGLPTVAT
0601: INGGPVDIHR VLDNGLLVDP HDQQAIADAL LKLVSDRQLW GRCRQNGLNN IHLFSWPEHC KTYLARIASC KQRHPKWQRV EFENSDSDSP SDSLRDINDI
0701: SLNLKLSLDG EKSGSNNGVD TNLDAEDRAA ERKAEVEKAV STLAQKSKPT EKFDSKMPTL KRRKNIFVIS VDCSATSDLL AVVKTVIDAA GRGSSTGFIL
0801: STSMTISETH TALLSGGLKP QDFDAVICSS GSELYFTSSG SEDKTALPYT LDADYHSHIE FRWGGESLRK TLIRWISSVE EKKKTKKGEI LVEDESSSTN
0901: YCLSFKVKDP ALMPPMKELR KLMRNQALRC NAVYCQNGAR LNVIPVLASR SQALRYLLVR WGIDLSNMVV FVGDSGDTDY EGLLGGIHKT VILKGLASDL
1001: REQPGNRSYP MEDVTPLNSP NITEAKECGR DAIKVALEKL GISLLKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)