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AT5G11090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : serine-rich protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYUHeggNOG:ENOG410YKIUEMBL:AK227734EMBL:AL391222EMBL:AY087222EMBL:BT004808EMBL:CP002688
EnsemblPlants:AT5G11090EnsemblPlants:AT5G11090.1entrez:830977GeneID:830977Gramene:AT5G11090.1hmmpanther:PTHR33132hmmpanther:PTHR33132:SF12
HOGENOM:HOG000239586IntAct:Q9FY56KEGG:ath:AT5G11090OMA:SNHRHHEPhylomeDB:Q9FY56PIR:T51798Proteomes:UP000006548
RefSeq:NP_196670.1STRING:3702.AT5G11090.1TAIR:AT5G11090UniGene:At.28073UniProt:Q9FY56
Coordinates (TAIR10) chr5:+:3524796..3525449
Molecular Weight (calculated) 23757.70 Da
IEP (calculated) 12.11
GRAVY (calculated) -0.78
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)