AT5G11010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pre-mRNA cleavage complex II protein family | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3484176..3485831 | ||||||||
| Molecular Weight (calculated) | 36028.10 Da | ||||||||
| IEP (calculated) | 6.41 | ||||||||
| GRAVY (calculated) | -0.10 | ||||||||
| Length | 318 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEAENKLPF IPEEWSNAAS SVSCSSLQPV IALVCGPKNS GKSTFSRNLV EVLLQRYKRV AYLDTDVGQP EFTAPGFLSL TIVDKSILES DWTVPCVKTP 101: ERCFFYGDVS SKRDPKAYLR YVYTLFDYYQ LHFCKSSENK TELPLVINTP GWVKGIGYEL LVDVLRYVSP SHVVKINISA YNKNLPAGLF WLDGNDDETA 201: HLIEIQSAYQ DRYNQSILIH KDARLMRDMR IIAYFRQCFK GKEVNTIKEL THELASHIPY EVPISSLTIN HLHCQIPSSE VYYSLNASIV GLGISTEVFE 301: DLPSCVGLGK FLFIHCNQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)