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AT5G10950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQW7eggNOG:KOG1525EMBL:AL365234EMBL:AY063955
EMBL:AY096725EMBL:CP002688EnsemblPlants:AT5G10950EnsemblPlants:AT5G10950.1
entrez:830962GeneID:830962GO:GO:0005829Gramene:AT5G10950.1
hmmpanther:PTHR12663HOGENOM:HOG000152996KEGG:ath:AT5G10950OMA:HRVFYED
PIR:T50804Proteomes:UP000006548Reactome:R-ATH-2468052Reactome:R-ATH-2470946
RefSeq:NP_196656.1SMR:Q9LEU5STRING:3702.AT5G10950.1SUPFAM:SSF63748
TAIR:AT5G10950UniGene:At.27129UniProt:Q9LEU5
Coordinates (TAIR10) chr5:-:3459557..3461632
Molecular Weight (calculated) 43622.50 Da
IEP (calculated) 4.73
GRAVY (calculated) -1.46
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSRKRSSA KNRLVSSSTR SSGKDKVSDA RKYGEALVGS RIRVWWPMDS KFYKGVVDSY VSSKKKHRVF YEDGDKETLD LKKERWELIE EDDAESESDE
101: ISLQEESAGE SSEGTPEPPK GKGKASLKGR TDEAMPKKKQ KIDSSSKSKA KEVEKKASKP ETEKNGKMGD IGGKIVAAAS RMSERFRSKG NVDQKETSKA
201: SKKPKMSSKL TKRKHTDDQD EDEEAGDDID TSSEEAKPKV LKSCNSNADE VAENSSDEDE PKVLKTNNSK ADKDEDEEEN ETSDDEAEPK ALKLSNSNSD
301: NGENNSSDDE KEITISKITS KKIKSNTADE ENGDNEDGEK AVDEMSDGEP LVSFLKKSPE GIDAKRKKMK GKKEEEEEEG EENAGKDTKA EEASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)