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AT5G10860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystathionine beta-synthase (CBS) family protein; FUNCTIONS IN: cobalt ion binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G47271.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16231eggNOG:COG0517eggNOG:ENOG410IET6EMBL:AF361845EMBL:AL365234EMBL:AY066046EMBL:CP002688
EnsemblPlants:AT5G10860EnsemblPlants:AT5G10860.1entrez:830953GeneID:830953Genevisible:Q9LEV3GO:GO:0005739GO:GO:0009651
GO:GO:0045454GO:GO:0050897Gramene:AT5G10860.1gramene_plant_reactome:1119460gramene_plant_reactome:1119600gramene_plant_reactome:6873698gramene_plant_reactome:6874293
hmmpanther:PTHR11911HOGENOM:HOG000187909InParanoid:Q9LEV3InterPro:IPR000644KEGG:ath:AT5G10860OMA:HHASRLTPaxDb:Q9LEV3
Pfam:PF00571Pfam:Q9LEV3Pfscan:PS51371PhylomeDB:Q9LEV3PIR:T50795PRIDE:Q9LEV3PRO:PR:Q9LEV3
PROSITE:PS51371ProteinModelPortal:Q9LEV3Proteomes:UP000006548RefSeq:NP_196647.1SMART:SM00116SMR:Q9LEV3STRING:3702.AT5G10860.1
SUPFAM:SSF54631SwissPalm:Q9LEV3TAIR:AT5G10860UniGene:At.28210UniProt:Q9LEV3
Coordinates (TAIR10) chr5:-:3429173..3430142
Molecular Weight (calculated) 22730.60 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.22
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGVIRSFVS GGNVVKGSVL QHLRVINPAI QPSVFCSRSE STQPARMEES GFESTTISDV MKSKGKSADG SWLWCTTDDT VYDAVKSMTQ HNVGALVVVK
101: PGEQQALAGI ITERDYLRKI IVQGRSSKST KVGDIMTEEN KLITVTPETK VLRAMQLMTD NRIRHIPVIK DKGMIGMVSI GDVVRAVVHE HREELQRLNA
201: YIQGGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)