suba logo
AT5G10840.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endomembrane protein 70 protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G25100.1); Has 1652 Blast hits to 1622 proteins in 358 species: Archae - 0; Bacteria - 81; Metazoa - 616; Fungi - 232; Plants - 453; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Protein Annotations
BioGrid:16229eggNOG:ENOG410XPIWeggNOG:KOG1278EMBL:AL365234EMBL:BX833631EMBL:CP002688EnsemblPlants:AT5G10840
EnsemblPlants:AT5G10840.1entrez:830951GeneID:830951Genevisible:F4KIB2GO:GO:0000139GO:GO:0005768GO:GO:0005774
GO:GO:0005794GO:GO:0005802GO:GO:0009505GO:GO:0010008GO:GO:0016021Gramene:AT5G10840.1hmmpanther:PTHR10766
hmmpanther:PTHR10766:SF46HOGENOM:HOG000216679InParanoid:Q9LEV5InterPro:IPR004240InterPro:IPR020846KEGG:ath:AT5G10840KO:K17086
OMA:DFEKKDPPANTHER:PTHR10766PaxDb:F4KIB2Pfam:F4KIB2Pfam:PF02990PIR:T50793PRIDE:F4KIB2
PRO:PR:F4KIB2ProteinModelPortal:F4KIB2Proteomes:UP000006548RefSeq:NP_196645.2STRING:3702.AT5G10840.1SUPFAM:SSF103473SwissPalm:F4KIB2
TAIR:AT5G10840TMHMM:TMhelixUniGene:At.27558UniGene:At.49006UniProt:F4KIB2
Coordinates (TAIR10) chr5:-:3424910..3427797
Molecular Weight (calculated) 74471.20 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.29
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMEFLRSSR RILESSGCAI ALIFLLFIHG AHSFYLPGVA PQDFEKGDEL KVKVNKLTSI KTQLPYSYYS LPFCRPSKIV DSTENLGEVL RGDRIENAPY
101: SFKMREAQMC NILGRVTLDA KTAKAFKEKI DDEYRVNMIL DNLPLVVPIE RVDQGSPSVV YQLGYHVGLK GQYEGSKEQK FFMHNHLAFT VRYHRDIQTD
201: AARIVGFEVK PYSVKHEYEG EWSEKTRLTT CDPHTKRLVV SSATPQEVEQ KKEIIFTYDV DFQESEVKWA SRWDTYLLMS DNQIHWFSIV NSLMIVLFLS
301: GMVAMIMLRT LYRDISRYNE LETQEEAQEE TGWKLVHGDV FRLPTNSDLL CVYVGTGVQC LGMVFVTMIF AMLGFLSPSN RGGLMTAMLL LWVFMGLFAG
401: YASSRLYKMF KGTEWKRIAF RTAFLFPAVV SAIFFVLNAL IWGQKSSGAV PFGTMFALIF LWFGISVPLV FVGGYIGFKK PAADDPVKTN KIPRQIPEQA
501: WYMNPVFSIL IGGILPFGAV FIELFFILTS IWLNQFYYIF GFLFLVFVIL IVTCAEITVV LCYFQLCSED YLWWWRSYLT SGSSALYLFL YATFYFFTKL
601: QITKLVSAML YFGYMLIASY AFFVLTGTIG FYACLWFTRL IYSSVKID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)