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AT5G10780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41118KQeggNOG:KOG3318EMBL:AF428403EMBL:AY037209
EMBL:AY057731EMBL:CP002688EnsemblPlants:AT5G10780EnsemblPlants:AT5G10780.1
entrez:830945ExpressionAtlas:Q93VE6GeneID:830945GO:GO:0016021
Gramene:AT5G10780.1hmmpanther:PTHR19315hmmpanther:PTHR19315:SF9HOGENOM:HOG000163282
InterPro:IPR009445PANTHER:PTHR19315Pfam:PF06417PhylomeDB:Q93VE6
PIRSF:PIRSF017207Proteomes:UP000006548RefSeq:NP_568238.1STRING:3702.AT5G10780.2
TAIR:AT5G10780TMHMM:TMhelixUniGene:At.6007UniProt:Q93VE6
Coordinates (TAIR10) chr5:+:3408422..3409759
Molecular Weight (calculated) 19909.00 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.14
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKGKAVMGT GRRWAVEFSD QSTVPSSRDI LDPPGFSRAS QEQDDSANSR QKKDAEATWK LQKAWEVAQS PFKNLMMMGF MMWMAGNTVH LFSIGITFSA
101: LWQPISALQS VGKIFEPFKD NKVELLMPKL VFLALNLGGL ALGVWKLNTL GLLPTHASDW VSSLPPPQEV EHSGGGFVFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)