suba logo
AT5G10580.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.920
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF599
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT4G31330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEH0eggNOG:ENOG4111JFKEMBL:AF385697EMBL:AL353995EMBL:AY078013EMBL:CP002688EnsemblPlants:AT5G10580
EnsemblPlants:AT5G10580.1entrez:830923ExpressionAtlas:Q9LXB0GeneID:830923GO:GO:0016021Gramene:AT5G10580.1hmmpanther:PTHR31881
hmmpanther:PTHR31881:SF6HOGENOM:HOG000238997InterPro:IPR006747KEGG:ath:AT5G10580OMA:HIYLWYKPfam:PF04654PhylomeDB:Q9LXB0
PIR:T49981Proteomes:UP000006548RefSeq:NP_196620.1TAIR:AT5G10580TMHMM:TMhelixUniGene:At.1809UniProt:Q9LXB0
Coordinates (TAIR10) chr5:+:3347511..3348657
Molecular Weight (calculated) 27635.00 Da
IEP (calculated) 6.75
GRAVY (calculated) 0.45
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MEWEKWYLDA VLVPSALLMM FGYHIYLWYK VRTDPFCTIV GTNSRARRSW VAAIMKDNEK KNILAVQTLR NTIMGGTLMA TTCILLCAGL AAVLSSTYSI
101: KKPLNDAVYG AHGDFTVALK YVTILTIFLF AFFSHSLSIR FINQVNILIN APQEPFSDDF GEIGSFVTPE YVSELLEKAF LLNTVGNRLF YMGLPLMLWI
201: FGPVLVFLSS ALIIPVLYNL DFVFLLSNKE KGKVDCNGGC DDNFSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)