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AT5G10560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15539469
SwissProt : extracellular 16381842
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23738689 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT1G78060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G10560-MONOMERCAZy:GH3EC:3.2.1.-eggNOG:COG1472eggNOG:ENOG410IE0IEMBL:AK117237EMBL:AL353995
EMBL:AY057483EMBL:CP002688EnsemblPlants:AT5G10560EnsemblPlants:AT5G10560.1entrez:830921Gene3D:3.20.20.300Gene3D:3.40.50.1700
GeneID:830921Genevisible:Q9LXA8GO:GO:0005578GO:GO:0005773GO:GO:0005774GO:GO:0005975GO:GO:0009044
Gramene:AT5G10560.1hmmpanther:PTHR30620hmmpanther:PTHR30620:SF19HOGENOM:HOG000031216InParanoid:Q9LXA8InterPro:IPR001764InterPro:IPR002772
InterPro:IPR017853InterPro:IPR026891InterPro:IPR026892iPTMnet:Q9LXA8KEGG:ath:AT5G10560OMA:TAVPMNDPANTHER:PTHR30620
PaxDb:Q9LXA8Pfam:PF00933Pfam:PF01915Pfam:PF14310Pfam:Q9LXA8PhylomeDB:Q9LXA8PIR:T49983
PRIDE:Q9LXA8PRO:PR:Q9LXA8ProteinModelPortal:Q9LXA8Proteomes:UP000006548RefSeq:NP_196618.1SMART:SM01217SMR:Q9LXA8
STRING:3702.AT5G10560.1SUPFAM:0046644SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT5G10560UniGene:At.1811UniProt:Q9LXA8
Coordinates (TAIR10) chr5:-:3336335..3339351
Molecular Weight (calculated) 87189.80 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.20
Length 792 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLQLTLISL LFFTSAIAET FKNLDSHPQF PCKPPHFSSY PFCNVSLSIK QRAISLVSLL MLPEKIGQLS NTAASVPRLG IPPYEWWSES LHGLADNGPG
101: VSFNGSISAA TSFPQVIVSA ASFNRTLWYE IGSAVAVEGR AMYNGGQAGL TFWAPNINVF RDPRWGRGQE TPGEDPKVVS EYGVEFVRGF QEKKKRKVLK
201: RRFSDDVDDD RHDDDADGKL MLSACCKHFT AYDLEKWGNF TRYDFNAVVT EQDMEDTYQP PFETCIRDGK ASCLMCSYNA VNGVPACAQG DLLQKARVEW
301: GFEGYITSDC DAVATIFAYQ GYTKSPEEAV ADAIKAGVDI NCGTYMLRHT QSAIEQGKVS EELVDRALLN LFAVQLRLGL FDGDPRRGQY GKLGSNDICS
401: SDHRKLALEA TRQGIVLLKN DHKLLPLNKN HVSSLAIVGP MANNISNMGG TYTGKPCQRK TLFTELLEYV KKTSYASGCS DVSCDSDTGF GEAVAIAKGA
501: DFVIVVAGLD LSQETEDKDR VSLSLPGKQK DLVSHVAAVS KKPVILVLTG GGPVDVTFAK NDPRIGSIIW IGYPGETGGQ ALAEIIFGDF NPGGRLPTTW
601: YPESFTDVAM SDMHMRANSS RGYPGRTYRF YTGPQVYSFG TGLSYTKFEY KILSAPIRLS LSELLPQQSS HKKQLQHGEE LRYLQLDDVI VNSCESLRFN
701: VRVHVSNTGE IDGSHVVMLF SKMPPVLSGV PEKQLIGYDR VHVRSNEMME TVFVIDPCKQ LSVANDVGKR VIPLGSHVLF LGDLQHSLSV EF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)