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AT5G10540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zincin-like metalloproteases family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: cytosol, apoplast, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G65620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G10540-MONOMERBioGrid:16197EC:3.4.24.70eggNOG:COG0339eggNOG:KOG2089EMBL:AL353995EMBL:AY050978
EMBL:BT002369EMBL:CP002688EnsemblPlants:AT5G10540EnsemblPlants:AT5G10540.1entrez:830919Gene3D:1.10.1370.10Gene3D:1.20.1050.40
Gene3D:3.40.390.10GeneID:830919Genevisible:Q949P2GO:GO:0004222GO:GO:0005829GO:GO:0006518GO:GO:0009507
GO:GO:0046686GO:GO:0046872GO:GO:0048046Gramene:AT5G10540.1hmmpanther:PTHR11804hmmpanther:PTHR11804:SF49HOGENOM:HOG000245986
InParanoid:Q949P2InterPro:IPR001567InterPro:IPR024077InterPro:IPR024079InterPro:IPR024080iPTMnet:Q949P2KEGG:ath:AT5G10540
KO:K01414MEROPS:M03.A02ncoils:CoilOMA:DYDFRAYPaxDb:Q949P2PDB:4PUTPDBsum:4PUT
Pfam:PF01432Pfam:Q949P2PhylomeDB:Q949P2PIR:T49985PRIDE:Q949P2PRO:PR:Q949P2PROSITE:PS00142
ProteinModelPortal:Q949P2Proteomes:UP000006548RefSeq:NP_568232.1SMR:Q949P2STRING:3702.AT5G10540.1SUPFAM:SSF55486TAIR:AT5G10540
UniGene:At.44412UniGene:At.73023UniProt:Q949P2
Coordinates (TAIR10) chr5:+:3328119..3332462
Molecular Weight (calculated) 79048.10 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.37
Length 701 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEDTLSSN PLLQNFDFPP FDSVDAHHVR PGIRALLQQL EAELEQLEKA VEPSWPKLVE PLEKIIDRLS VVWGMINHLK AVKDTPELRA AIEEVQPEKV
101: KFQLRLGQSK PIYNAFKAIR ESPDWNSLSE ARQRLVEAQI KEAVLSGIAL EDDKREEFNK IEQELEKLSH KFSENVLDAT KKFEKLITDK KEIEGLPPSA
201: LGLFAQAAVS KGHETATADT GPWLITLDAP SYLPVMQHAK NRALREEVYR AYLSRASSGD LDNTAIIDQI LKLRLEKAKL LGYRNYAEVS MATKMATVEK
301: ADELLEKLRS ASWDPAVQDI EDLKSFAKNQ GAAEADSLTH WDITFWSERL RESKYDINEE ELRPYFSLPK VMDALFGLAK TLFGIDVVPA DGVAPVWNSD
401: VRFYCVKDSS GNPTAYFYFD PYSRPSEKRD GAWMDEVFSR SRVMAQKGSS VRLPVAQMVC NQTPPVGDKP SLMTFREVET VFHEFGHALQ HMLTKEDEGL
501: VAGIRNIEWD AVELPSQFME NWCYHRDTLM SIAKHYQTGE TLPENVYKKL LAARTFRAGS LSLRQLKFAT VDLELHTKYM PGGAETIYEV DQRVSIKTQV
601: IPPLPEDRFL CSFSHIFAGG YAAGYYSYKW AEVLSADAFS AFEDAGLDDI KAVKETGQRF RNTILALGGG KAPLKVFVEF RGREPSPEPL LRHNGLLAAS
701: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)