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AT5G10450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17317660 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : G-box regulating factor 6
Curator
Summary (TAIR10)
Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.
Computational
Description (TAIR10)
G-box regulating factor 6 (GRF6); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway, response to cadmium ion, defense response to bacterium, phosphorylation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 8 (TAIR:AT5G65430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16187eggNOG:COG5040eggNOG:KOG0841EMBL:AF145298EMBL:AL353995EMBL:AY052293EMBL:AY061918
EMBL:CP002688EMBL:U02565EMBL:U68545EMBL:X74141EnsemblPlants:AT5G10450EnsemblPlants:AT5G10450.1entrez:830909
ExpressionAtlas:P48349GeneID:830909Genevisible:P48349GO:GO:0005634GO:GO:0005886hmmpanther:PTHR18860hmmpanther:PTHR18860:SF27
HOGENOM:HOG000240379InParanoid:P48349IntAct:P48349InterPro:IPR000308InterPro:IPR023409InterPro:IPR023410MINT:MINT-7147002
ncoils:CoilOMA:ELSDICAPANTHER:PTHR18860PaxDb:P48349Pfam:P48349Pfam:PF00244PhylomeDB:P48349
PIR:S47970PIR:S53727PIR:T49994PIRSF:PIRSF000868PRIDE:P48349PRINTS:PR00305PRO:PR:P48349
PROSITE:PS00796PROSITE:PS00797ProteinModelPortal:P48349Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511RefSeq:NP_001190276.1
RefSeq:NP_568229.1scanprosite:PS00796scanprosite:PS00797SMART:SM00101SMR:P48349STRING:3702.AT5G10450.4SUPFAM:SSF48445
SwissPalm:P48349TAIR:AT5G10450tair10-symbols:14-3-3lambdatair10-symbols:AFT1tair10-symbols:GRF6UniGene:At.24269UniProt:P48349
Coordinates (TAIR10) chr5:-:3284452..3286261
Molecular Weight (calculated) 27977.20 Da
IEP (calculated) 4.49
GRAVY (calculated) -0.36
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATLGRDQY VYMAKLAEQA ERYEEMVQFM EQLVTGATPA EELTVEERNL LSVAYKNVIG SLRAAWRIVS SIEQKEESRK NDEHVSLVKD YRSKVESELS
101: SVCSGILKLL DSHLIPSAGA SESKVFYLKM KGDYHRYMAE FKSGDERKTA AEDTMLAYKA AQDIAAADMA PTHPIRLGLA LNFSVFYYEI LNSSDKACNM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)