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AT5G10440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : cyclin d4;2
Curator
Summary (TAIR10)
Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.
Computational
Description (TAIR10)
cyclin d4;2 (CYCD4;2); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2823 Blast hits to 2820 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1255; Fungi - 334; Plants - 962; Viruses - 9; Other Eukaryotes - 263 (source: NCBI BLink).
Protein Annotations
BioGrid:16186eggNOG:ENOG410XRKCeggNOG:KOG0656EMBL:AK228653
EMBL:AL353995EMBL:BT012602EMBL:BT014959EMBL:CP002688
EnsemblPlants:AT5G10440EnsemblPlants:AT5G10440.1entrez:830908Gene3D:1.10.472.10
GeneID:830908Genevisible:Q0WQN9GO:GO:0005634GO:GO:0005737
GO:GO:0007049GO:GO:0010440GO:GO:0051301Gramene:AT5G10440.1
hmmpanther:PTHR10177hmmpanther:PTHR10177:SF213HOGENOM:HOG000242458InParanoid:Q0WQN9
IntAct:Q0WQN9InterPro:IPR004367InterPro:IPR006671InterPro:IPR013763
iPTMnet:Q0WQN9KEGG:ath:AT5G10440KO:K18810OMA:FEFEAST
PaxDb:Q0WQN9Pfam:PF00134Pfam:PF02984Pfam:Q0WQN9
PhylomeDB:Q0WQN9PIR:T49995PRIDE:Q0WQN9PRO:PR:Q0WQN9
PROSITE:PS00292ProteinModelPortal:Q0WQN9Proteomes:UP000006548RefSeq:NP_196606.3
scanprosite:PS00292SMART:SM00385SMART:SM01332SMR:Q0WQN9
STRING:3702.AT5G10440.1SUPFAM:SSF47954TAIR:AT5G10440tair10-symbols:CYCD4;2
UniGene:At.32378UniProt:Q0WQN9
Coordinates (TAIR10) chr5:-:3280611..3282342
Molecular Weight (calculated) 33777.40 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.18
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)