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AT5G10380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.
Computational
Description (TAIR10)
RING1; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16180EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK176500EMBL:AL353995EMBL:CP002688
EnsemblPlants:AT5G10380EnsemblPlants:AT5G10380.1entrez:830902Gene3D:3.30.40.10GeneID:830902Genevisible:Q9LX93GO:GO:0002238
GO:GO:0004842GO:GO:0005886GO:GO:0006915GO:GO:0006952GO:GO:0008270GO:GO:0009617GO:GO:0010200
GO:GO:0012501GO:GO:0016021GO:GO:0016567GO:GO:0016874GO:GO:0043068GO:GO:0051865Gramene:AT5G10380.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF94HOGENOM:HOG000034176InParanoid:Q9LX93InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G10380
KO:K10664OMA:TWLLSHKPaxDb:Q9LX93Pfam:PF13639Pfam:Q9LX93Pfscan:PS50089PhylomeDB:Q9LX93
PIR:T50001PRIDE:Q9LX93PRO:PR:Q9LX93PROSITE:PS50089ProteinModelPortal:Q9LX93Proteomes:UP000006548RefSeq:NP_196600.1
SMART:SM00184SMR:Q9LX93STRING:3702.AT5G10380.1SUPFAM:SSF101447SUPFAM:SSF57850TAIR:AT5G10380tair10-symbols:ATRING1
tair10-symbols:RING1TMHMM:TMhelixUniGene:At.1824UniPathway:UPA00143UniProt:Q9LX93
Coordinates (TAIR10) chr5:+:3267819..3268724
Molecular Weight (calculated) 34044.20 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.45
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFNHRKMLL SCLQFKDLRF CFRQYPPPPP PPPPPRELSL LLPTSICVVG SIILFLFLVF FLYLHITQQR RISAASVTPG DTNQQEDEDE TEERDFSDFH
101: HVWQIPTVGL HRSAINSITV VGFKKGEGII DGTECSVCLN EFEEDESLRL LPKCSHAFHL NCIDTWLLSH KNCPLCRAPV LLITEPPHQE TETNHQPDSE
201: SSNDLRGRQD SSRSRRNHNI FLPRAQSDLA NYCGSGRVEN VRRSFSIGGS LSLCDGINNA TRSGRQFYTS FSANLFSSSR RVRNEQPIPQ NQMPSVTGNT
301: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)