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AT5G10280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 92
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB92).
Computational
Description (TAIR10)
myb domain protein 92 (MYB92); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 53 (TAIR:AT5G65230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:830892eggNOG:COG5147eggNOG:KOG0048EMBL:AF062916EMBL:AL360334EMBL:AY519619EMBL:BT002877
EMBL:BT004402EMBL:CP002688EnsemblPlants:AT5G10280EnsemblPlants:AT5G10280.1entrez:830892Gene3D:1.10.10.60GeneID:830892
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009751GO:GO:0009753Gramene:AT5G10280.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF609HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G10280KO:K09422
OMA:HGHSSWRPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SBF3PIR:T50816PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_196590.1SMART:SM00717SMR:Q9SBF3STRING:3702.AT5G10280.1SUPFAM:SSF46689TAIR:AT5G10280tair10-symbols:ATMYB64
tair10-symbols:ATMYB92tair10-symbols:MYB92UniGene:At.49790UniGene:At.5999UniProt:Q9SBF3
Coordinates (TAIR10) chr5:+:3232776..3233956
Molecular Weight (calculated) 37655.00 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.61
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPISDDS GLKKGPWTPD EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY LRPDIKRGRF SPDEEQTILN LHSVLGNKWS TIANQLPGRT
101: DNEIKNFWNT HLKKKLIQMG FDPMTHRPRT DIFSGLSQLM SLSSNLRGFV DLQQQFPIDQ EHTILKLQTE MAKLQLFQYL LQPSSMSNNV NPNDFDTLSL
201: LNSIASFKET SNNTTSNNLD LGFLGSYLQD FHSLPSLKTL NSNMEPSSVF PQNLDDNHFK FSTQRENLPV SPIWLSDPSS TTPAHVNDDL IFNQYGIEDV
301: NSNITSSSGQ ESGASASAAW PDHLLDDSIF SDIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)