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AT5G10270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclin-dependent kinase C;1
Curator
Summary (TAIR10)
Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.
Computational
Description (TAIR10)
cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin dependent kinase group C2 (TAIR:AT5G64960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G10270-MONOMERBioGrid:16169EC:2.7.11.22EC:2.7.11.23eggNOG:ENOG410XPIReggNOG:KOG0600EMBL:AF375437
EMBL:AL360334EMBL:AY120690EMBL:CP002688EnsemblPlants:AT5G10270EnsemblPlants:AT5G10270.1entrez:830891GeneID:830891
Genevisible:Q9LFT8GO:GO:0004693GO:GO:0005524GO:GO:0005829GO:GO:0008353GO:GO:0009615GO:GO:0016301
GO:GO:0048366Gramene:AT5G10270.1hmmpanther:PTHR24056hmmpanther:PTHR24056:SF227HOGENOM:HOG000233024InParanoid:Q9LFT8IntAct:Q9LFT8
InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009InterPro:IPR017441iPTMnet:Q9LFT8KEGG:ath:AT5G10270KO:K08819
ncoils:CoilOMA:QGRPDGNPaxDb:Q9LFT8Pfam:PF00069Pfam:Q9LFT8Pfscan:PS50011PhylomeDB:Q9LFT8
PIR:T50815PRIDE:Q9LFT8PRO:PR:Q9LFT8PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q9LFT8
Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-674695RefSeq:NP_196589.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q9LFT8STRING:3702.AT5G10270.1SUPFAM:SSF56112TAIR:AT5G10270tair10-symbols:CDKC;1UniGene:At.19998UniProt:Q9LFT8
Coordinates (TAIR10) chr5:-:3221715..3224674
Molecular Weight (calculated) 56732.40 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.82
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)