AT5G10190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.841 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G78130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:3199205..3201140 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52908.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.38 | ||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSETLTLVL VYLAGIMERA DESLLPGVYK EVGDALHVDP TALGTLTLFR SIVQSSCYPL AAYLSSRHNR AHVIALGAFL WATATFLVAV STTFFQVAVS 101: RGLNGIGLAI VTPAIQSLVA DSTDDYNRGM AFGWLGFTSN IGSILGYVCS ILFASKSFNG VAGWRIAFLL VAVVSVIVGI LVRLFATDPH YSDRKITKHV 201: KDKPFWSDIR DLLKEAKMVI KIPSFQIFVA QGVSGSFPWS ALAFAPLWLE LIGFSHKTTA VLVTLFTISC SLGGLFGGYM GDTLAKKFPN GGRIFLSQVS 301: SGSAIPLAAI LLIGLPDDPS TAFSHGLVLV IMGLCISWNG AATNGPIFAE IVPERARTSI YALDRSFESI LASFAPPIVG MLAQNIYGYK PIPEGSTSSV 401: KIDTDRANAA SLAKALYTSI GIPMVICCTI YSFLYCTYPR DRDRAKMQAL IESEMQQLNE EEDEIEVKCF GAEEHDEAYL LKQHQNES |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)