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AT5G10190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.807
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G78130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG1330EMBL:AF360162EMBL:AY113893EMBL:CP002688EnsemblPlants:AT5G10190EnsemblPlants:AT5G10190.1
entrez:830883GeneID:830883GO:GO:0016021GO:GO:0055085Gramene:AT5G10190.1hmmpanther:PTHR23505hmmpanther:PTHR23505:SF15
HOGENOM:HOG000240506InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT5G10190ncoils:CoilOMA:KRKVAMGPfam:PF07690
Pfscan:PS50850PhylomeDB:Q9C5L6PROSITE:PS50850Proteomes:UP000006548RefSeq:NP_196581.1STRING:3702.AT5G10190.1SUPFAM:SSF103473
TAIR:AT5G10190TMHMM:TMhelixUniGene:At.1632UniProt:Q9C5L6
Coordinates (TAIR10) chr5:+:3199205..3201140
Molecular Weight (calculated) 52908.20 Da
IEP (calculated) 6.42
GRAVY (calculated) 0.38
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSETLTLVL VYLAGIMERA DESLLPGVYK EVGDALHVDP TALGTLTLFR SIVQSSCYPL AAYLSSRHNR AHVIALGAFL WATATFLVAV STTFFQVAVS
101: RGLNGIGLAI VTPAIQSLVA DSTDDYNRGM AFGWLGFTSN IGSILGYVCS ILFASKSFNG VAGWRIAFLL VAVVSVIVGI LVRLFATDPH YSDRKITKHV
201: KDKPFWSDIR DLLKEAKMVI KIPSFQIFVA QGVSGSFPWS ALAFAPLWLE LIGFSHKTTA VLVTLFTISC SLGGLFGGYM GDTLAKKFPN GGRIFLSQVS
301: SGSAIPLAAI LLIGLPDDPS TAFSHGLVLV IMGLCISWNG AATNGPIFAE IVPERARTSI YALDRSFESI LASFAPPIVG MLAQNIYGYK PIPEGSTSSV
401: KIDTDRANAA SLAKALYTSI GIPMVICCTI YSFLYCTYPR DRDRAKMQAL IESEMQQLNE EEDEIEVKCF GAEEHDEAYL LKQHQNES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)