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AT5G10160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioesterase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioesterase superfamily protein; FUNCTIONS IN: hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: cell wall, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (InterPro:IPR013114), Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (InterPro:IPR010084); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G22230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1803-MONOMEReggNOG:COG0764eggNOG:ENOG410IF9KEMBL:AK227658EMBL:AL356332EMBL:BT003116EMBL:CP002688
EnsemblPlants:AT5G10160EnsemblPlants:AT5G10160.1entrez:830880Gene3D:3.10.129.10GeneID:830880GO:GO:0005618GO:GO:0006633
GO:GO:0009507GO:GO:0009534GO:GO:0009941GO:GO:0016020GO:GO:0016836Gramene:AT5G10160.1HAMAP:MF_00406
hmmpanther:PTHR30272hmmpanther:PTHR30272:SF5HOGENOM:HOG000277829IntAct:Q9LX13InterPro:IPR010084InterPro:IPR013114InterPro:IPR029069
KEGG:00061+4.2.1.59KEGG:00780+4.2.1.59KEGG:ath:AT5G10160KO:K02372OMA:PTENELYPfam:PF07977PhylomeDB:Q9LX13
PIR:T50020Proteomes:UP000006548RefSeq:NP_196578.1SMR:Q9LX13STRING:3702.AT5G10160.1SUPFAM:SSF54637TAIR:AT5G10160
TIGRfam:TIGR01750TIGRFAMs:TIGR01750UniGene:At.1631UniGene:At.20673UniProt:Q9LX13
Coordinates (TAIR10) chr5:+:3185819..3187159
Molecular Weight (calculated) 24124.70 Da
IEP (calculated) 9.81
GRAVY (calculated) 0.12
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSSVFTV SPSRNLAAIP LHQSLSPPLL RSSSVAFRPK RRSSSLVLCS TDESKSTAEK EIPIELRYEA FPTVMDINKI QEILPHRFPF LLVDRVIEYT
101: AGVSAVAIKN VTINDNFFPG HFPERPIMPG VLMVEAMAQV GGIVMLQPEV GGSRSNFFFA GIDKVRFRKP VIAGDTLVMR MTLVKLQKRF GIAKMEGKAY
201: VGNSVVCEGE FLMAMGKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)