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AT5G10030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TGACG motif-binding factor 4
Curator
Summary (TAIR10)
Encodes a member of basic leucine zipper transcription gene family. Nomenclature according to Xiang, et al. (1997).
Computational
Description (TAIR10)
TGACG motif-binding factor 4 (TGA4); FUNCTIONS IN: calmodulin binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G65210.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKSNeggNOG:ENOG410YEGWEMBL:AK229351EMBL:BT024896EnsemblPlants:AT5G10030EnsemblPlants:AT5G10030.1EnsemblPlants:AT5G10030.2
entrez:830866ExpressionAtlas:Q24JJ3GeneID:830866GO:GO:0003700GO:GO:0006351GO:GO:0043565Gramene:AT5G10030.1
Gramene:AT5G10030.2hmmpanther:PTHR22952hmmpanther:PTHR22952:SF180InterPro:IPR004827InterPro:IPR025422KEGG:ath:AT5G10030KO:K14431
ncoils:CoilOMA:CAMERLEPaxDb:Q39162Pfam:PF00170Pfam:PF14144Pfam:Q39162Pfscan:PS50217
PhylomeDB:Q24JJ3PRO:PR:Q39162PROSITE:PS00036PROSITE:PS50217RefSeq:NP_001190270.1RefSeq:NP_196565.1scanprosite:PS00036
SMART:SM00338SMR:Q24JJ3STRING:3702.AT5G10030.1SUPFAM:SSF57959TAIR:AT5G10030tair10-symbols:OBF4tair10-symbols:TGA4
UniGene:At.24071UniProt:Q24JJ3UniProt:Q39162
Coordinates (TAIR10) chr5:-:3137648..3139295
Molecular Weight (calculated) 41753.70 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.56
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)