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AT5G09930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC transporter family protein
Curator
Summary (TAIR10)
member of GCN subfamily
Computational
Description (TAIR10)
GENERAL CONTROL NON-REPRESSIBLE 2 (GCN2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 5 (TAIR:AT5G64840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0488eggNOG:KOG0927EMBL:AB016893EMBL:CP002688EnsemblPlants:AT5G09930EnsemblPlants:AT5G09930.1entrez:830854
Gene3D:3.40.50.300GeneID:830854Genevisible:Q9FIB4GO:GO:0005215GO:GO:0005524GO:GO:0016887Gramene:AT5G09930.1
hmmpanther:PTHR19211hmmpanther:PTHR19211:SF48HOGENOM:HOG000271638InParanoid:Q9FIB4InterPro:IPR003439InterPro:IPR003593InterPro:IPR017871
InterPro:IPR027417InterPro:IPR032781iPTMnet:Q9FIB4KEGG:ath:AT5G09930ncoils:CoilOMA:GIMDFGMPaxDb:Q9FIB4
Pfam:PF00005Pfam:PF12848Pfam:Q9FIB4Pfscan:PS50893PhylomeDB:Q9FIB4PRIDE:Q9FIB4PRO:PR:Q9FIB4
PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9FIB4Proteomes:UP000006548RefSeq:NP_196555.2scanprosite:PS00211SMART:SM00382
SMR:Q9FIB4STRING:3702.AT5G09930.1SUPFAM:SSF52540TAIR:AT5G09930tair10-symbols:ATGCN2tair10-symbols:GCN2UniGene:At.54793
UniProt:Q9FIB4
Coordinates (TAIR10) chr5:-:3097643..3100241
Molecular Weight (calculated) 76495.30 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.37
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLTTNLYSL NLRSTFFFTN TITCPTLFTF KLSSVSNPRR VFPNIRAHVS AASSNSELES LLSTDRKLIS KQSNNGASSI SSGVRLENIS KSYEGITVLK
101: DVTWEVKKGE KVGLIGVNGA GKTTQLRIIT GQEEPDSGNV IWAKPNLKVA FLSQEFEVSM GKTVKEEFMC TFKEEMEIAR KLENLQKAIE EAVDDLELMG
201: KLLDEFDLLQ RRAQEVDLDS IHAKISKLMS ELGFVSEDAD RLVASFSSGW QMRMSLGKIL LQNPDLLLLD EPTNHLDLDT IEWLEGYLIK QDVPMVIISH
301: DRAFLDQLCT KIVETEMGVS RTFDGNYSQY VISKAELVEA QYAAWEKQQK EIEATKDLIS RLSAGANSGR ASSAEKKLEK LQEEELIEKP FQRKQMKIRF
401: PECGLSGRSV VTVKNLVFGF DDKMLFNKAN LAIERGEKVA IIGPNGCGKS TLLKLIMGLE KPMRGEVILG EHNVLPNYFE QNQAEAQDLD KTVIETVVEA
501: AVDWRIDDIK ALLGRCNFKA DMLDRKVSLL SGGEKARLAF CKFMVKPSTL LVLDEPTNHL DIPSKEMLEE AINEYKGTVI TVSHDRYFIK QIVNRVIEVR
601: DGGLMDYAGD YNYFLEKNVE ARARELEREA ELEEKAPKVK AKSKMSKAER EARKKQKMKA FQASKKKSKS SKNAKRWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)