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AT5G09880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Splicing factor, CC1-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT2G16940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP20eggNOG:KOG0147EMBL:AY054603EMBL:CP002688EnsemblPlants:AT5G09880EnsemblPlants:AT5G09880.1entrez:830848
Gene3D:3.30.70.330GeneID:830848GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0006397Gramene:AT5G09880.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF361InterPro:IPR000504InterPro:IPR006509InterPro:IPR012677InterPro:IPR029123KEGG:ath:AT5G09880
KO:K13091ncoils:CoilOMA:ADECSKYPfam:PF00076Pfam:PF13893Pfam:PF15519Pfscan:PS50102
PhylomeDB:Q93Y25PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_568220.1SMART:SM00360SMR:Q93Y25STRING:3702.AT5G09880.1
SUPFAM:SSF54928TAIR:AT5G09880TIGRfam:TIGR01622TIGRFAMs:TIGR01622UniGene:At.6946UniProt:Q93Y25
Coordinates (TAIR10) chr5:-:3081646..3085179
Molecular Weight (calculated) 59384.30 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.97
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFDEYEYLE KTVEEGAGSN KKKEESGNER SERSYRKREG GERQGEEGGE EERVSSRSKK SRGDGEENGG GKRDRERERH RSSRDKDRER DKVREGSRDK
101: ESDRERSSKE RDRSDRDKPR DRERREREKR SSSRSRREEK EPEVVERGSR RHRDKKDEPE ADPERDQRTV FAYQMPLKAT ERDVYEFFSK AGKVRDVRLI
201: MDRNSRRSKG VGYIEFYDVM SVPMAIALSG QLFLGQPVMV KPSEAEKNLA QSNSTTVGGT GPADRKLYVG NLHFNMSELQ LRQIFEAFGP VELVQLPLDP
301: ETGQCKGFGF IQFVQLEHSK AAQIALNGKL EIAGRTIKVS SVSDHIGTQD SAPKSADFDD DDGGGLALNA QSRAMLMQKL DRSGIATSIV GSLGVPGLNG
401: AAFNQPGMNP SFPTSVLPTT AIPSFVNEHV GLPSECLLLK NMFDPATETE PNFDLEIRDD VADECSKYGP VNHIYVDKNS AGFVYLRFQS VEAAAAAQRA
501: MHMRWFAQKM ISATFMPPHE YEAKAKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)