AT5G09870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cellulose synthase 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a cellulose synthase isomer, related to CESA6. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase 5 (CESA5); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone, plant-type cell wall biogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 6 (TAIR:AT5G64740.1); Has 3218 Blast hits to 2905 proteins in 647 species: Archae - 9; Bacteria - 1207; Metazoa - 1; Fungi - 23; Plants - 1882; Viruses - 5; Other Eukaryotes - 91 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:3073356..3077974 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120868.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1069 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNTGGRLIAG SHNRNEFVLI NADESARIRS VEELSGQTCQ ICGDEIELSV DGESFVACNE CAFPVCRPCY EYERREGNQS CPQCKTRYKR IKGSPRVEGD 0101: EEDDGIDDLD FEFDYSRSGL ESETFSRRNS EFDLASAPPG SQIPLLTYGE EDVEISSDSH ALIVSPSPGH IHRVHQPHFP DPAAHPRPMV PQKDLAVYGY 0201: GSVAWKDRME EWKRKQNEKY QVVKHDGDSS LGDGDDADIP MMDEGRQPLS RKVPIKSSKI NPYRMLIVLR LVILGLFFHY RILHPVNDAY ALWLISVICE 0301: IWFAVSWVLD QFPKWYPIER ETYLDRLSLR YEKEGKPSEL AGVDVFVSTV DPMKEPPLIT ANTVLSILAV DYPVDRVACY VSDDGAAMLT FEALSETAEF 0401: ARKWVPFCKK YTIEPRAPEW YFCHKMDYLK NKVHPAFVRE RRAMKRDYEE FKVKINALVA TAQKVPEEGW TMQDGTPWPG NNVRDHPGMI QVFLGNNGVR 0501: DVENNELPRL VYVSREKRPG FDHHKKAGAM NSLIRVSGVL SNAPYLLNVD CDHYINNSKA LREAMCFMMD PQSGKKICYV QFPQRFDGID KSDRYSNRNV 0601: VFFDINMKGL DGLQGPIYVG TGCVFRRQAL YGFDAPKKKK TKRMTCNCWP KWCLFCCGLR KNRKSKTTDK KKKNREASKQ IHALENIEEG TKGTNDAAKS 0701: PEAAQLKLEK KFGQSPVFVA SAGMENGGLA RNASPASLLR EAIQVISCGY EDKTEWGKEI GWIYGSVTED ILTGFKMHSH GWRSVYCTPK IPAFKGSAPI 0801: NLSDRLHQVL RWALGSVEIF LSRHCPIWYG YGGGLKWLER LSYINSVVYP WTSIPLLVYC SLPAICLLTG KFIVPEISNY ASILFMALFG SIAVTGILEM 0901: QWGKVGIDDW WRNEQFWVIG GVSAHLFALF QGLLKVLAGV ETNFTVTSKA ADDGEFSELY IFKWTSLLIP PTTLLIINVI GVIVGISDAI SNGYDSWGPL 1001: FGRLFFAFWV ILHLYPFLKG LLGKQDRMPT IILVWSILLA SILTLLWVRV NPFVAKGGPI LEICGLDCL |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)