suba logo
AT5G09840.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative endonuclease or glycosyl hydrolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G64710.1); Has 416 Blast hits to 392 proteins in 63 species: Archae - 2; Bacteria - 5; Metazoa - 78; Fungi - 41; Plants - 277; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK8YeggNOG:ENOG410YBH2EMBL:AB016893EMBL:CP002688EnsemblPlants:AT5G09840EnsemblPlants:AT5G09840.1entrez:830844
Gene3D:3.40.50.1010GeneID:830844GO:GO:0004519GO:GO:0005739GO:GO:0005777GO:GO:0010468Gramene:AT5G09840.1
hmmpanther:PTHR14379hmmpanther:PTHR14379:SF6HOGENOM:HOG000084978InterPro:IPR021139InterPro:IPR024768InterPro:IPR025605InterPro:IPR025677
InterPro:IPR029060KEGG:ath:AT5G09840ncoils:CoilOMA:TWEELGPPANTHER:PTHR14379Pfam:PF01936Pfam:PF12872
Pfam:PF14418Pfscan:PS51644PhylomeDB:Q9FIC2PROSITE:PS51644Proteomes:UP000006548RefSeq:NP_196546.1SMR:Q9FIC2
STRING:3702.AT5G09840.1TAIR:AT5G09840UniGene:At.32448UniProt:Q9FIC2
Coordinates (TAIR10) chr5:+:3059027..3061970
Molecular Weight (calculated) 102373.00 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.57
Length 924 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFGSLPSKS LLFRLSSSST TQSHRRTITL FITNIHSSPF STTTTSGSNF VSGSSHSPSR RPQQDEESRS VRVSVWWDFL SCNLPVDTNV YKVAQSITAA
101: IRNSGIKGPI TITAFGDVLQ LPRSNQDALS ATGISLTHVP NGGKNSADRS LITDLMCWVS QNPPPAHLLL ISSDKEFASV LHRLRMNNYN ILLASKSSAP
201: GVLCSAASIM WDWDALIKGE CVTGKHFNQP PDGPYNSWYG HYRIPLLDPF AIATTTEQSS SSVKIEELSE SVNSNAVVNL RPIPKEVVDK IRSIVSLYPK
301: GAAITELRAE LSKSNLAIDK DFYGHKKFSK FLLSMPDILQ VTTVSEGLFM IRAVTEKKPP MRLDSSPRLS TAVDQKIKDK ETVNAPSPKL ISDVELAAER
401: RRDGLLGKKQ EKVLESDKIV KEESSESSQD PILVGQKDVK ANVKPVETNQ VALVAWSDSS MEDGFFQKLK RLWYGSPEME LEHLPEMKSV SGSGDTHRED
501: NDLKSSSQGS GNKHKEDKDL KSSSQGTVPM SQISPSFVAE SVDEVKVGAD DVDSKDKDAS PGFLGRLLKS FKFWGKNTKS SKDSSGNQEL VNVDSQVQDI
601: FAKEYFWSDI ESFINSPRGF AIVSHSRTRE VMAKNVQEEG PSCLRLLDES SMLHLVTLLI SEKKWIEETP SSSLPFRIIK GSSPGHRHAS NGLSSIFSDS
701: SKSQWQKQNG EKSGKNVAHA GVSVGSVDRK ELERYKSNAI ADCQKMIKKI TEEHPEGYSL IRFRKDFLEE YGYHLAVDKL GYDNLQSLIR VMHGVRIASG
801: YIFPSTPSPN AKSKEDDSDL AFAELGPVSD TTTTHPTTKK LPVYEPSLSE DEEDSGSERD NPEKKKQQMM SKEGKESSLL QILDSYYTNK DGELKENPVE
901: RKLVSNGRKQ KPTKTYSFVK DSEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)