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AT5G09810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28443122 (2017): plasma membrane
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin 7
Curator
Summary (TAIR10)
Member of Actin gene family.Mutants are defective in germination and root growth.
Computational
Description (TAIR10)
actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink).
Protein Annotations
BioGrid:16119eggNOG:COG5277eggNOG:KOG0676EMBL:AB016893EMBL:AY062702EMBL:AY063980EMBL:AY096397
EMBL:AY114679EMBL:AY120779EMBL:CP002688EMBL:U27811EMBL:U37281EnsemblPlants:AT5G09810EnsemblPlants:AT5G09810.1
entrez:830841GeneID:830841Genevisible:P53492GO:GO:0005200GO:GO:0005524GO:GO:0005618GO:GO:0005730
GO:GO:0005739GO:GO:0005829GO:GO:0005856GO:GO:0005886GO:GO:0009416GO:GO:0009506GO:GO:0009570
GO:GO:0009611GO:GO:0009733GO:GO:0009845GO:GO:0009941GO:GO:0010053GO:GO:0048364GO:GO:0048767
GO:GO:0051301Gramene:AT5G09810.1hmmpanther:PTHR11937hmmpanther:PTHR11937:SF200HOGENOM:HOG000233339InParanoid:P53492IntAct:P53492
InterPro:IPR004000InterPro:IPR004001InterPro:IPR020902KEGG:ath:AT5G09810KO:K10355OMA:KMADAEDPANTHER:PTHR11937
PaxDb:P53492Pfam:P53492Pfam:PF00022PhylomeDB:P53492PIR:S68107PRIDE:P53492PRINTS:PR00190
PRO:PR:P53492PROSITE:PS00406PROSITE:PS00432PROSITE:PS01132ProteinModelPortal:P53492Proteomes:UP000006548RefSeq:NP_196543.1
scanprosite:PS00406scanprosite:PS00432scanprosite:PS01132SMART:SM00268SMR:P53492STRING:3702.AT5G09810.1SUPFAM:SSF53067
SwissPalm:P53492TAIR:AT5G09810tair10-symbols:ACT7UniGene:At.23346UniGene:At.23605UniGene:At.24396UniGene:At.65835
UniProt:P53492
Coordinates (TAIR10) chr5:+:3052809..3054220
Molecular Weight (calculated) 41738.20 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.18
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)