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AT5G09660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
  • PMID:15028209 (2004): plastid
  • PMID:12154131 (2002): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxisomal NAD-malate dehydrogenase 2
Curator
Summary (TAIR10)
encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational
Description (TAIR10)
peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17070 Blast hits to 17068 proteins in 5416 species: Archae - 235; Bacteria - 12016; Metazoa - 1211; Fungi - 533; Plants - 741; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G09660-MONOMERBioCyc:ARA:GQT-2009-MONOMERBioCyc:ARA:GQT-2010-MONOMERBioCyc:ARA:GQT-2011-MONOMERBioCyc:MetaCyc:AT5G09660-MONOMERBioGrid:16103EC:1.1.1.37
eggNOG:COG0039eggNOG:KOG1494EMBL:AB020752EMBL:AF428373EMBL:AJ131206EMBL:AL353994EMBL:AY037252
EMBL:AY077653EMBL:CP002688EnsemblPlants:AT5G09660EnsemblPlants:AT5G09660.1entrez:830825ExpressionAtlas:Q9ZP05Gene3D:3.40.50.720
Gene3D:3.90.110.10GeneID:830825Genevisible:Q9ZP05GO:GO:0006097GO:GO:0006099GO:GO:0006108GO:GO:0009514
GO:GO:0030060gramene_pathway:1.1.1.37gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWYQT-4481hmmpanther:PTHR11540hmmpanther:PTHR11540:SF21
HOGENOM:HOG000213792InParanoid:Q9ZP05InterPro:IPR001236InterPro:IPR001252InterPro:IPR001557InterPro:IPR010097InterPro:IPR015955
InterPro:IPR016040InterPro:IPR022383KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37KEGG:00720+1.1.1.37PANTHER:PTHR11540PaxDb:Q9ZP05Pfam:PF00056Pfam:PF02866Pfam:Q9ZP05
PhylomeDB:Q9ZP05PIR:T49932PIRSF:PIRSF000102PRIDE:Q9ZP05PRO:PR:Q9ZP05PROSITE:PS00068ProteinModelPortal:Q9ZP05
Proteomes:UP000006548Reactome:R-ATH-70263Reactome:R-ATH-71403RefSeq:NP_196528.1scanprosite:PS00068SMR:Q9ZP05STRING:3702.AT5G09660.4
SUPFAM:SSF51735SUPFAM:SSF56327TAIR:AT5G09660tair10-symbols:PMDH2TIGRfam:TIGR01772TIGRFAMs:TIGR01772UniGene:At.40751
UniGene:At.47611UniProt:Q9ZP05
Coordinates (TAIR10) chr5:-:2993645..2995551
Molecular Weight (calculated) 37371.50 Da
IEP (calculated) 8.11
GRAVY (calculated) 0.10
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)