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AT5G09630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.638
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LisH/CRA/RING-U-box domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2); Has 826 Blast hits to 826 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 219; Plants - 140; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5109eggNOG:KOG2817EMBL:AB020752EMBL:AL353994EMBL:AY087278EMBL:BT029210EMBL:CP002688
EnsemblPlants:AT5G09630EnsemblPlants:AT5G09630.1entrez:830822Gene3D:3.30.40.10GeneID:830822GO:GO:0008270Gramene:AT5G09630.1
hmmpanther:PTHR12170hmmpanther:PTHR12170:SF3HOGENOM:HOG000211399InterPro:IPR006594InterPro:IPR006595InterPro:IPR013083InterPro:IPR013144
InterPro:IPR024964InterPro:IPR027711KEGG:ath:AT5G09630OMA:MRWISENPANTHER:PTHR12170:SF3Pfam:PF10607Pfam:PF13445
Pfscan:PS50896Pfscan:PS50897PhylomeDB:Q9LXC7PIR:T49935PROSITE:PS50896PROSITE:PS50897Proteomes:UP000006548
RefSeq:NP_196525.1SMART:SM00668SMART:SM00757STRING:3702.AT5G09630.1SUPFAM:SSF57850TAIR:AT5G09630UniGene:At.32481
UniProt:Q9LXC7
Coordinates (TAIR10) chr5:-:2986016..2987176
Molecular Weight (calculated) 44428.90 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.25
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVTGTVTVR DAFDRVSKKQ KLYHSVTQDV IDLVCDGIQD TLTRIQLGND DGVEPESVLT ELRRKLDALL PIIQLQKSHK ETKWSLSKLV KLLEVSYHPD
101: ISLACFSVDF DINLVNKILI HHCYREGLFD VGDCLVKEAG REEETEVRSQ FLEFHQIVDS LKLRNIEPAM RWIFANRGKL KQKSSKLEFK LLSLKYCDIL
201: REGKSDDALE YARTHFTQYP LHFKEIQKLI TCLLWIGNFE KSPYAEIVSP SCWDKVTKEL IMEYHHLLDQ PINSPLKVAL SAGYESLPSL LKLVHLMALT
301: KQEWQAMKQL PVPLELGNEY KFHSAFVCPV SRDQSSEENP PMQLPCGHVI SKQSMMRLSK NCAFRTFKCP YCPAETLASA CRQLYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)