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AT5G09490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S19 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S19 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09500.1); Has 9411 Blast hits to 9411 proteins in 3582 species: Archae - 256; Bacteria - 4896; Metazoa - 280; Fungi - 237; Plants - 1722; Viruses - 0; Other Eukaryotes - 2020 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0185eggNOG:KOG0898EMBL:DQ446937EnsemblPlants:AT5G09490
EnsemblPlants:AT5G09490.1entrez:830808Gene3D:3.30.860.10GeneID:830808
GO:GO:0003723GO:GO:0003735GO:GO:0006412GO:GO:0015935
Gramene:AT5G09490.1HAMAP:MF_00531hmmpanther:PTHR11880hmmpanther:PTHR11880:SF12
InterPro:IPR002222InterPro:IPR005713InterPro:IPR020934InterPro:IPR023575
KEGG:ath:AT5G09490KO:K02958OMA:PTDDLVKPANTHER:PTHR11880
PaxDb:Q1PDY1PaxDb:Q9FY66Pfam:PF00203Pfam:Q9FY66
PhylomeDB:Q1PDY1PIRSF:PIRSF002144PRIDE:Q1PDY1PRINTS:PR00975
PROSITE:PS00323ProteinModelPortal:Q1PDY1RefSeq:NP_196511.1scanprosite:PS00323
SMR:Q1PDY1SMR:Q9FY66STRING:3702.AT5G09490.1SUPFAM:SSF54570
TAIR:AT5G09490TIGRfam:TIGR01025TIGRFAMs:TIGR01025UniGene:At.32506
UniProt:Q1PDY1UniProt:Q9FY66
Coordinates (TAIR10) chr5:-:2952378..2953183
Molecular Weight (calculated) 17141.30 Da
IEP (calculated) 10.83
GRAVY (calculated) -0.30
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEVEPDVSA AALAKKRTFK KFSFKGVDLD ALLDMPTDDL VELFPSRIRR RMSRGLTRKP MALIKKLRKA KLDAPAGEKP EVVRTHLRNM VIMPEMIGSI
101: IGVYNGKTFN QIEIKPEMIG HYLAEFSITY KPVRHGKPGH GATHSSRFIP LK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)