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AT5G09480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 11004 Blast hits to 3872 proteins in 771 species: Archae - 28; Bacteria - 3950; Metazoa - 1856; Fungi - 491; Plants - 328; Viruses - 210; Other Eukaryotes - 4141 (source: NCBI BLink).
Protein Annotations
EMBL:AK228344EMBL:AL391712EMBL:BT004759EMBL:CP002688
EnsemblPlants:AT5G09480EnsemblPlants:AT5G09480.1entrez:830807GeneID:830807
Gramene:AT5G09480.1IntAct:Q9FY67KEGG:ath:AT5G09480OMA:KTENTKP
Proteomes:UP000006548RefSeq:NP_196510.1STRING:3702.AT5G09480.1TAIR:AT5G09480
TMHMM:TMhelixUniGene:At.32507UniProt:Q9FY67
Coordinates (TAIR10) chr5:-:2951181..2951615
Molecular Weight (calculated) 15985.60 Da
IEP (calculated) 3.78
GRAVY (calculated) -0.61
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNVRLPILV SSVLFLVFIS SSLLFPTPSF AARVSHSLVQ EEVKKVPEYT EPEEPEVPEE PELPSPEEPE IPEEPEIPEE PEVPGEPEVP EEPEEPEEPE
101: GSTFEFPSWF PSFPIPGVNG GLPKTEKTKP TSTVEEVNVS NKKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)