suba logo
AT5G09450.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G02820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16082eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL391712EMBL:AY042834EMBL:AY086405EMBL:BT002562
EMBL:CP002688EnsemblPlants:AT5G09450EnsemblPlants:AT5G09450.1entrez:830804Gene3D:1.25.40.10GeneID:830804Genevisible:Q94B59
GO:GO:0005739Gramene:AT5G09450.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF155HOGENOM:HOG000240837InParanoid:Q94B59IntAct:Q94B59
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G09450OMA:QWQRSKAPaxDb:Q94B59Pfam:PF01535Pfam:PF13041
Pfam:Q94B59Pfscan:PS51375PhylomeDB:Q94B59PRIDE:Q94B59PRO:PR:Q94B59PROSITE:PS51375ProteinModelPortal:Q94B59
Proteomes:UP000006548RefSeq:NP_568214.1SMR:Q94B59STRING:3702.AT5G09450.1TAIR:AT5G09450TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.20970UniProt:Q94B59
Coordinates (TAIR10) chr5:+:2941864..2943324
Molecular Weight (calculated) 46811.70 Da
IEP (calculated) 6.21
GRAVY (calculated) -0.34
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)