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AT5G09390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CD2-binding protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IP0UeggNOG:ENOG41121GMEMBL:AY085215EMBL:AY123988
EMBL:BT000562EMBL:CP002688EnsemblPlants:AT5G09390EnsemblPlants:AT5G09390.1
entrez:830798ExpressionAtlas:Q8L4S3GeneID:830798Gramene:AT5G09390.1
hmmpanther:PTHR13138hmmpanther:PTHR13138:SF3HOGENOM:HOG000243095OMA:NNRKEKM
PhylomeDB:Q8L4S3Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_568211.1
SMR:Q8L4S3STRING:3702.AT5G09390.1TAIR:AT5G09390UniGene:At.27973
UniProt:Q8L4S3
Coordinates (TAIR10) chr5:+:2913591..2915803
Molecular Weight (calculated) 40301.60 Da
IEP (calculated) 4.24
GRAVY (calculated) -1.18
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSSSRRNL KRSFLEDEDS DKQPPEKRVR FPKGKKSKPE QLLEEEALAR RKARDAAKER AKIRNQNTTK LFIEDDSDDI NQAQETYEDD GNRTEDGIQI
101: EAFSLDREKE EGYFDADGNF VEYVREKEVK DAWLDSIEKN PMYMGRSAAN DTEMDDDSGN EKAGDDLSQD EIGVRKRRIA NVLEPGETVL RALRRLKGNS
201: NNRKEKMTSE TKLIFDQLTE DADKLIENGD YNVYHEEQEV FQREAEGYER LAQAKENGTA NIVSCDMFGD DENAPEPSSD LQPSSSISGT QLNSDYVFDE
301: SSGYYYSSSL GYYYDPNTGL YCYATTGKWY RYDEETKEYK EVVSEVATEE V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)