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AT5G09320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.577
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vacuolar sorting protein 9 (VPS9) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS9B; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT3G19770.1); Has 1393 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 217; Plants - 509; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YGAZeggNOG:KOG2319EMBL:AL391712EMBL:CP002688EnsemblPlants:AT5G09320EnsemblPlants:AT5G09320.1entrez:830791
GeneID:830791Gramene:AT5G09320.1hmmpanther:PTHR23101hmmpanther:PTHR23101:SF25HOGENOM:HOG000152589InterPro:IPR003123KEGG:ath:AT5G09320
OMA:RCCKVINPfam:PF02204Pfscan:PS51205PhylomeDB:Q9FY83PROSITE:PS51205Proteomes:UP000006548RefSeq:NP_196494.1
SMART:SM00167SMR:Q9FY83STRING:3702.AT5G09320.1SUPFAM:0044157TAIR:AT5G09320tair10-symbols:VPS9BUniGene:At.32529
UniProt:Q9FY83
Coordinates (TAIR10) chr5:-:2889007..2892016
Molecular Weight (calculated) 80141.90 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.28
Length 712 amino acids
Sequence (TAIR10)
(BLAST)
001: MENTDVVSGL HNFLSKPSAK DFIKSIKSFI VSILNTAPDP EKDCDAVQDF FYKMESAFRA HPLWSGCSDD ELDNAGDGLE KYVMTKLFPR VFASNTEDVI
101: SDEKLFQKIS LVQQFISPEN LDIQPTFQNQ TSWLLAQKEL QKINMYNAPR DKLMCILRCC KVINNLLLNA SIASNQNEPG ADQFLPVLIY VTIKANPPQF
201: HSNLLYIQRY RRQSKLVGEA GYLFTNILSA ESFISNIDAK SLSMDEADFE TKMKSAHARL SGPGSQSYQT DHGAALPTAH NTKRENMLLH TKSTDSFSGT
301: NETLSETPIK KADPITDLEN KGAATLLNDR SEATKIFQEY PYMFASVGDL KIGDVEDLLN NYKQLVFKYV CLSKGLGDAT SLTPCISPLQ ASKVSENHTT
401: LSSDFQTKSE TDRSVDNLFR ALQGYYCNFA SFSAPLPFPH HSEEQSLTAT MEGIGLRSCG DDILRLGFKL RGGTGGRIQI LQRAMVIKMR DRSKNRKPLQ
501: RGRMLSIEAI QAVQALKRAN PLLPPPPVPS TSTTSSSSAL LDRVIISKFR RLLKFDMVAV LRELLRQNEC SLALKVFEEI RKEYWYKPQV RMYTDMITVM
601: ADNSLMEEVN YLYSAMKSEK GLMAEIEWFN TLLTILLNHK LFDLVMDCYA FMQSIGYEPD RASFRVLVLG LESNGEMGLS AIVRQDAHEY YGESLEFIEE
701: DEEISSGTSV LI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)