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AT5G09250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ssDNA-binding transcriptional regulator
Curator
Summary (TAIR10)
putative transcriptional co-activator (KIWI) mRNA, complete
Computational
Description (TAIR10)
KIWI; FUNCTIONS IN: protein binding, transcription coactivator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator p15 (InterPro:IPR003173), ssDNA-binding transcriptional regulator (InterPro:IPR009044); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09240.1); Has 436 Blast hits to 424 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 115; Plants - 101; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
BioGrid:16062eggNOG:ENOG410XUB8eggNOG:KOG2712EMBL:AF053302
EMBL:AL391712EMBL:BT004745EMBL:CP002688EnsemblPlants:AT5G09250
EnsemblPlants:AT5G09250.1entrez:830784ExpressionAtlas:O65154Gene3D:2.30.31.10
GeneID:830784Genevisible:O65154GO:GO:0003677GO:GO:0003713
GO:GO:0005634GO:GO:0006351GO:GO:0006355hmmpanther:PTHR13215
HOGENOM:HOG000239157InParanoid:O65154IntAct:O65154InterPro:IPR003173
InterPro:IPR009044iPTMnet:O65154OMA:RNHAEDIPaxDb:O65154
Pfam:O65154Pfam:PF02229PhylomeDB:O65154PIR:T52113
PRIDE:O65154PRO:PR:O65154ProteinModelPortal:O65154Proteomes:UP000006548
RefSeq:NP_196487.1SMR:O65154STRING:3702.AT5G09250.1SUPFAM:SSF54447
TAIR:AT5G09250tair10-symbols:KIWIUniGene:At.10039UniProt:O65154
UniProt:Q0WS63
Coordinates (TAIR10) chr5:-:2875421..2876368
Molecular Weight (calculated) 12084.00 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.99
Length 107 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRGKRKDE DVRASDDESE THAPAKKVAK PADDSDQSDD IVVCNISKNR RVSVRNWNGK IWIDIREFYV KDGKTLPGKK GISLSVDQWN TLRNHAEDIE
101: KALSDLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)