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AT5G08600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : U3 ribonucleoprotein (Utp) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1); Has 7611 Blast hits to 5651 proteins in 499 species: Archae - 10; Bacteria - 906; Metazoa - 2522; Fungi - 1145; Plants - 309; Viruses - 73; Other Eukaryotes - 2646 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5644eggNOG:KOG2172EMBL:AB006697EMBL:AK226629
EMBL:CP002688EnsemblPlants:AT5G08600EnsemblPlants:AT5G08600.1entrez:830761
ExpressionAtlas:Q9FNM8GeneID:830761GO:GO:0006364GO:GO:0019013
GO:GO:0032040Gramene:AT5G08600.1hmmpanther:PTHR14150hmmpanther:PTHR14150:SF12
HOGENOM:HOG000240061InterPro:IPR006709ncoils:CoilPANTHER:PTHR14150
Pfam:PF04615PhylomeDB:Q9FNM8Proteomes:UP000006548RefSeq:NP_196477.1
STRING:3702.AT5G08600.2TAIR:AT5G08600UniGene:At.54779UniProt:Q9FNM8
Coordinates (TAIR10) chr5:+:2786298..2789736
Molecular Weight (calculated) 93476.00 Da
IEP (calculated) 5.31
GRAVY (calculated) -1.06
Length 822 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGEKRKSS FKNLANAKKR RTGPHLPSSI LKTIANEKRP LNSDEGDDEI DSAYGDFYEY EEGVPEEESR KNNRYERVVN YEFELAEDCE DENVESEDDD
101: DDDDDDDDDR HSRMLKNVTE LPISAFQGES KNKRVVFTEP YPESEFNPTR DVLEGKSLTT IDDFMEPLQG LHGNSQLSNM ISRMRKDTQS LVHAPLPKPE
201: QERLERDVAN ELVYKGFDIW VPLVKRNREA PTIYFNQDVN VGYSTVGAIA SQFHPRTEFE MKMASLLDDH EILEAHKEDG ARLLEFNEVS MEDHIKRRNH
301: VAKMRSMLFR VDLKHKRIKQ IKSKTYHRLK NKDLNQSGVG AFMEPAMAKE EAKKQEARRV KERMTLKHKN TGQWAKRMLS RGLNRKYDVT QAALSKQLQI
401: HATLSRKMNS TKDESSSDEE DLNDGSDQDT SKLIAEAKEK ILKTVDDDEV PISRLMSLPF MARAVKKKNE EAKEEGKRDI EELEKFGGAE TSKKSTNVVG
501: RRVFGAEAPK ESEKESDNLF DNSDSSDNDM EDNELEAVKD NASPARNTET IMEAEKLDDI AGNPASKTTF DVALYASGSW KKMTGCKNAE SKKASKTHVP
601: ISQSQDKKES SDSESDDSES DDSESEAEQM VDGILTCGSK ETYEIPCQAE LVSRAFAGDD VEGDFEKDKQ EVLNQEVPEP EKPVQVAGWG HWTNNQNKRG
701: LPSRIVREHE EAKKTREQAL RKRKDASFKH VIISEKVDKK AEKLQTKSLP YPYTSKEVFE QSMRMPIGPE FNPTTIVGVL NRPEVVKKAG VIIKPVKFEE
801: VNPNDEHPRS HQKQKPKKKG GK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)