AT5G08500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.744 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane CLPTM1 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane CLPTM1 family protein; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G23575.1); Has 489 Blast hits to 489 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 77; Plants - 58; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2748261..2751590 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68288.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 590 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPAGETAA VVEGGDGQQQ RQAGGFGQTI TGIIRIAVFC YFASKFFSPK QKPADPSKPT HLMSNLFQRG EPIDMWFYLS EHEKFNDFGN EGALIWHETN 101: IPYAVWKPES TRTLSMTYYP SEALKNNGSL YAHVFFALSG YPIDLSDPEY QPLNCFGRTH PVATYLPKRK ADKKKSLLGN PKDSDESHVE VEEVDGKDSD 201: LKDEGPVEWV SYWKPNVTIN LVDDFTRYPQ HGVPPNIYPY LLVEPSTINY YPTVFFNEFW LLRDKLILIN ETVSELPLNL EVSPISMTKW QLFQQIDQSF 301: QIHRSYGSML DGESDELKRV FLEGNPYLLG VTMFVSMLHS VFDFLAFKND IQFWNKNKSM EGLSAKSVVL NFICQFIIFL YLLDNDTSWM ILASSGVGVC 401: IEFWKIGKAM RIEVDRSGMI PRLRFHDRES YASNKTKEYD DIAIKFLSYV LLLLVVGFSI YSLAYERHKS WYSWILSSLT SCVYMFGFIM MCPQLFINYK 501: LKSVAHLPWR QMTYKFLNTI IDDLFAFVIK MPMLHRLSVF RDDVIFLIYL YQRWVYPVDK TRVNEFGFGG EDESVDTKKI SDQEDDKKTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)