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AT5G08500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.413
vacuole 0.386
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane CLPTM1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane CLPTM1 family protein; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G23575.1); Has 489 Blast hits to 489 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 77; Plants - 58; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPEVeggNOG:KOG2489EMBL:AB006697EMBL:AY099856EMBL:CP002688EnsemblPlants:AT5G08500EnsemblPlants:AT5G08500.1
entrez:830749GeneID:830749GO:GO:0016021Gramene:AT5G08500.1hmmpanther:PTHR21347hmmpanther:PTHR21347:SF0HOGENOM:HOG000201405
InterPro:IPR008429KEGG:ath:AT5G08500OMA:EQNNDETPANTHER:PTHR21347Pfam:PF05602PhylomeDB:Q9FNN8Proteomes:UP000006548
RefSeq:NP_196467.1STRING:3702.AT5G08500.1TAIR:AT5G08500TMHMM:TMhelixUniGene:At.32570UniProt:Q9FNN8
Coordinates (TAIR10) chr5:+:2748261..2751590
Molecular Weight (calculated) 68288.80 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.19
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPAGETAA VVEGGDGQQQ RQAGGFGQTI TGIIRIAVFC YFASKFFSPK QKPADPSKPT HLMSNLFQRG EPIDMWFYLS EHEKFNDFGN EGALIWHETN
101: IPYAVWKPES TRTLSMTYYP SEALKNNGSL YAHVFFALSG YPIDLSDPEY QPLNCFGRTH PVATYLPKRK ADKKKSLLGN PKDSDESHVE VEEVDGKDSD
201: LKDEGPVEWV SYWKPNVTIN LVDDFTRYPQ HGVPPNIYPY LLVEPSTINY YPTVFFNEFW LLRDKLILIN ETVSELPLNL EVSPISMTKW QLFQQIDQSF
301: QIHRSYGSML DGESDELKRV FLEGNPYLLG VTMFVSMLHS VFDFLAFKND IQFWNKNKSM EGLSAKSVVL NFICQFIIFL YLLDNDTSWM ILASSGVGVC
401: IEFWKIGKAM RIEVDRSGMI PRLRFHDRES YASNKTKEYD DIAIKFLSYV LLLLVVGFSI YSLAYERHKS WYSWILSSLT SCVYMFGFIM MCPQLFINYK
501: LKSVAHLPWR QMTYKFLNTI IDDLFAFVIK MPMLHRLSVF RDDVIFLIYL YQRWVYPVDK TRVNEFGFGG EDESVDTKKI SDQEDDKKTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)