AT5G08490.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 47451 Blast hits to 12929 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 30; Plants - 46987; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:2745208..2747757 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 94493.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.33 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 849 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGPLRQFVQN FRLLSGFGTD HRVFLDVVKA CASVSDLTSG RALHGCVFKL GHIACSEVSK SVLNMYAKCR RMDDCQKMFR QMDSLDPVVW NIVLTGLSVS 101: CGRETMRFFK AMHFADEPKP SSVTFAIVLP LCVRLGDSYN GKSMHSYIIK AGLEKDTLVG NALVSMYAKF GFIFPDAYTA FDGIADKDVV SWNAIIAGFS 201: ENNMMADAFR SFCLMLKEPT EPNYATIANV LPVCASMDKN IACRSGRQIH SYVVQRSWLQ THVFVCNSLV SFYLRVGRIE EAASLFTRMG SKDLVSWNVV 301: IAGYASNCEW FKAFQLFHNL VHKGDVSPDS VTIISILPVC AQLTDLASGK EIHSYILRHS YLLEDTSVGN ALISFYARFG DTSAAYWAFS LMSTKDIISW 401: NAILDAFADS PKQFQFLNLL HHLLNEAITL DSVTILSLLK FCINVQGIGK VKEVHGYSVK AGLLHDEEEP KLGNALLDAY AKCGNVEYAH KIFLGLSERR 501: TLVSYNSLLS GYVNSGSHDD AQMLFTEMST TDLTTWSLMV RIYAESCCPN EAIGVFREIQ ARGMRPNTVT IMNLLPVCAQ LASLHLVRQC HGYIIRGGLG 601: DIRLKGTLLD VYAKCGSLKH AYSVFQSDAR RDLVMFTAMV AGYAVHGRGK EALMIYSHMT ESNIKPDHVF ITTMLTACCH AGLIQDGLQI YDSIRTVHGM 701: KPTMEQYACA VDLIARGGRL DDAYSFVTQM PVEPNANIWG TLLRACTTYN RMDLGHSVAN HLLQAESDDT GNHVLISNMY AADAKWEGVM ELRNLMKKKE 801: MKKPAGCSWL EVDGQRNVFV SGDCSHPRRD SIFDLVNALY LQMKEPVVF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)