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AT5G08490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 47451 Blast hits to 12929 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 30; Plants - 46987; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB006697EMBL:CP002688
EnsemblPlants:AT5G08490EnsemblPlants:AT5G08490.1entrez:830748Gene3D:1.25.40.10
GeneID:830748Genevisible:Q9FNN9GO:GO:0005739GO:GO:0009414
GO:GO:0009737GO:GO:0080156Gramene:AT5G08490.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF417HOGENOM:HOG000083164InParanoid:Q9FNN9InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT5G08490OMA:NYVIMSNPaxDb:Q9FNN9
Pfam:PF01535Pfam:PF13041Pfam:Q9FNN9Pfscan:PS51375
PhylomeDB:Q9FNN9PRIDE:Q9FNN9PRO:PR:Q9FNN9PROSITE:PS51375
ProteinModelPortal:Q9FNN9Proteomes:UP000006548RefSeq:NP_196466.1SMR:Q9FNN9
STRING:3702.AT5G08490.1TAIR:AT5G08490TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.65496UniProt:Q9FNN9
Coordinates (TAIR10) chr5:-:2745208..2747757
Molecular Weight (calculated) 94493.40 Da
IEP (calculated) 7.33
GRAVY (calculated) 0.08
Length 849 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPLRQFVQN FRLLSGFGTD HRVFLDVVKA CASVSDLTSG RALHGCVFKL GHIACSEVSK SVLNMYAKCR RMDDCQKMFR QMDSLDPVVW NIVLTGLSVS
101: CGRETMRFFK AMHFADEPKP SSVTFAIVLP LCVRLGDSYN GKSMHSYIIK AGLEKDTLVG NALVSMYAKF GFIFPDAYTA FDGIADKDVV SWNAIIAGFS
201: ENNMMADAFR SFCLMLKEPT EPNYATIANV LPVCASMDKN IACRSGRQIH SYVVQRSWLQ THVFVCNSLV SFYLRVGRIE EAASLFTRMG SKDLVSWNVV
301: IAGYASNCEW FKAFQLFHNL VHKGDVSPDS VTIISILPVC AQLTDLASGK EIHSYILRHS YLLEDTSVGN ALISFYARFG DTSAAYWAFS LMSTKDIISW
401: NAILDAFADS PKQFQFLNLL HHLLNEAITL DSVTILSLLK FCINVQGIGK VKEVHGYSVK AGLLHDEEEP KLGNALLDAY AKCGNVEYAH KIFLGLSERR
501: TLVSYNSLLS GYVNSGSHDD AQMLFTEMST TDLTTWSLMV RIYAESCCPN EAIGVFREIQ ARGMRPNTVT IMNLLPVCAQ LASLHLVRQC HGYIIRGGLG
601: DIRLKGTLLD VYAKCGSLKH AYSVFQSDAR RDLVMFTAMV AGYAVHGRGK EALMIYSHMT ESNIKPDHVF ITTMLTACCH AGLIQDGLQI YDSIRTVHGM
701: KPTMEQYACA VDLIARGGRL DDAYSFVTQM PVEPNANIWG TLLRACTTYN RMDLGHSVAN HLLQAESDDT GNHVLISNMY AADAKWEGVM ELRNLMKKKE
801: MKKPAGCSWL EVDGQRNVFV SGDCSHPRRD SIFDLVNALY LQMKEPVVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)