suba logo
AT5G08415.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Radical SAM superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Radical SAM superfamily protein; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, lipoic acid synthase activity, iron-sulfur cluster binding, lipoate synthase activity, catalytic activity; INVOLVED IN: lipoic acid biosynthetic process, lipoate biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:2.8.1.8eggNOG:COG0320eggNOG:KOG2672EMBL:AB073745EMBL:AL392174EMBL:AY085458EMBL:BT025549
EMBL:CP002688EnsemblPlants:AT5G08415EnsemblPlants:AT5G08415.1entrez:830740Gene3D:3.20.20.70GeneID:830740Genevisible:Q8LEE8
GO:GO:0009107GO:GO:0009249GO:GO:0009507GO:GO:0016992GO:GO:0046872GO:GO:0051539Gramene:AT5G08415.1
gramene_pathway:2.8.1.1gramene_pathway:PWY0-501HAMAP:MF_00206HAMAP:MF_03129hmmpanther:PTHR10949hmmpanther:PTHR10949:SF12HOGENOM:HOG000235998
InParanoid:Q8LEE8InterPro:IPR003698InterPro:IPR006638InterPro:IPR007197InterPro:IPR013785InterPro:IPR027526InterPro:IPR031691
KEGG:00785+2.8.1.8KEGG:ath:AT5G08415KO:K03644OMA:APWIYTKPANTHER:PTHR10949PaxDb:Q8LEE8Pfam:PF04055
Pfam:PF16881Pfam:Q8LEE8PhylomeDB:Q8LEE8PRIDE:Q8LEE8PRO:PR:Q8LEE8ProteinModelPortal:Q8LEE8Proteomes:UP000006548
Reactome:R-ATH-389661RefSeq:NP_568196.1SMART:SM00729STRING:3702.AT5G08415.1SUPFAM:SSF102114TAIR:AT5G08415TIGRfam:TIGR00510
TIGRFAMs:TIGR00510UniGene:At.32581UniPathway:UPA00538UniProt:Q8LEE8
Coordinates (TAIR10) chr5:-:2710983..2713101
Molecular Weight (calculated) 43624.40 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.41
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MMHHCSITKP TFSISISTQK LHHHSSKFLN LGFRIRCESG DVSSPLRTKA VSLSSEMEDS SSLKKSLMEL EGKKSEPYPG GMPKMGPFTG RDPNVKKPAW
101: LRQKAPQGER FQEVKESLSR LNLNTVCEEA QCPNIGECWN GGGDGVATAT IMVLGDTCTR GCRFCAVKTS RNPPPPDPME PENTAKAIAS WGVDYIVITS
201: VDRDDIPDGG SGHFAQTVKA MKRHKPDIMI ECLTSDFRGD LEAVDTLVHS GLDVFAHNVE TVKRLQRLVR DPRAGYEQSM SVLKHAKISK PGMITKTSIM
301: LGLGETDEEL KEAMADLRAI DVDILTLGQY LQPTPLHLTV KEYVTPEKFD FWKTYGESIG FRYVASGPLV RSSYRAGELF VKTMVKESYS KSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)