suba logo
AT5G08390.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.797
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 114222 Blast hits to 41452 proteins in 998 species: Archae - 86; Bacteria - 11863; Metazoa - 46637; Fungi - 24709; Plants - 15354; Viruses - 6; Other Eukaryotes - 15567 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQACeggNOG:KOG0267EMBL:CP002688EnsemblPlants:AT5G08390EnsemblPlants:AT5G08390.1entrez:830737Gene3D:2.130.10.10
GeneID:830737GO:GO:0005874GO:GO:0008352GO:GO:0051013GO:GO:0080008Gramene:AT5G08390.1HAMAP:MF_03022
hmmpanther:PTHR19845hmmpanther:PTHR19845:SF0InParanoid:F4KB17InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472InterPro:IPR026962InterPro:IPR028021iPTMnet:F4KB17KEGG:ath:AT5G08390KO:K18643OMA:DIIGRTM
PANTHER:PTHR19845:SF0PaxDb:F4KB17Pfam:PF00400Pfam:PF13925Pfscan:PS50082Pfscan:PS50294PRIDE:F4KB17
PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4KB17Proteomes:UP000006548RefSeq:NP_568194.2
scanprosite:PS00678SMART:SM00320SMR:F4KB17STRING:3702.AT5G08390.1SUPFAM:SSF50978TAIR:AT5G08390UniGene:At.10141
UniGene:At.72630UniProt:F4KB17
Coordinates (TAIR10) chr5:+:2701448..2706910
Molecular Weight (calculated) 91612.00 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.44
Length 839 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)