suba logo
AT5G08330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT5G23280.1); Has 954 Blast hits to 946 proteins in 163 species: Archae - 0; Bacteria - 6; Metazoa - 29; Fungi - 0; Plants - 913; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:16008eggNOG:ENOG410IJ38eggNOG:ENOG410YHVMEMBL:AF412074EMBL:AL392174EMBL:AY072620EMBL:CP002688
EnsemblPlants:AT5G08330EnsemblPlants:AT5G08330.1entrez:830730GeneID:830730Genevisible:Q9FTA2GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0042752GO:GO:0043433GO:GO:0048511Gramene:AT5G08330.1
hmmpanther:PTHR31072hmmpanther:PTHR31072:SF7HOGENOM:HOG000239283InParanoid:Q9FTA2IntAct:Q9FTA2InterPro:IPR005333InterPro:IPR017887
KEGG:ath:AT5G08330KO:K16221OMA:APPEMVFPaxDb:Q9FTA2Pfam:PF03634Pfam:Q9FTA2Pfscan:PS51369
PhylomeDB:Q9FTA2PRIDE:Q9FTA2PRO:PR:Q9FTA2PROSITE:PS51369Proteomes:UP000006548RefSeq:NP_196450.1STRING:3702.AT5G08330.1
TAIR:AT5G08330UniGene:At.22911UniProt:Q9FTA2
Coordinates (TAIR10) chr5:+:2680828..2681547
Molecular Weight (calculated) 24753.10 Da
IEP (calculated) 10.20
GRAVY (calculated) -0.39
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)