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AT5G08260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 35
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 35 (scpl35); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 34 (TAIR:AT5G23210.1); Has 3632 Blast hits to 3579 proteins in 366 species: Archae - 0; Bacteria - 189; Metazoa - 629; Fungi - 858; Plants - 1539; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G08260-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282EMBL:AF370244EMBL:AL357612EMBL:AY062969
EMBL:CP002688EnsemblPlants:AT5G08260EnsemblPlants:AT5G08260.1entrez:830722ESTHER:arath-SCP35Gene3D:3.40.50.1820GeneID:830722
Genevisible:Q9LEY1GO:GO:0004185GO:GO:0005576GO:GO:0051603Gramene:AT5G08260.1hmmpanther:PTHR11802hmmpanther:PTHR11802:SF15
HOGENOM:HOG000198295InParanoid:Q9LEY1InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058InterPro:IPR033124KEGG:ath:AT5G08260
KO:K16297MEROPS:S10.A34OMA:WRAWFDRPANTHER:PTHR11802PaxDb:Q9LEY1Pfam:PF00450Pfam:Q9LEY1
PhylomeDB:Q9LEY1PIR:T50511PRIDE:Q9LEY1PRINTS:PR00724PRO:PR:Q9LEY1PROSITE:PS00131PROSITE:PS00560
ProteinModelPortal:Q9LEY1Proteomes:UP000006548RefSeq:NP_196443.1scanprosite:PS00131scanprosite:PS00560SMR:Q9LEY1STRING:3702.AT5G08260.1
SUPFAM:SSF53474TAIR:AT5G08260tair10-symbols:scpl35UniGene:At.23204UniProt:Q9LEY1
Coordinates (TAIR10) chr5:+:2657236..2661272
Molecular Weight (calculated) 53610.80 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.21
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKNALWLLC ILVLPAIACG RKPEKKVTIS SSGRKEDDLV TGLPGQPPVN FKHYAGYVNL GPEQKQKALF YWFFEAQQNS SRRPLVLWLN GGPGCSSIAY
101: GAAQELGPFL VHDNGGKLTY NHFSWNKEAN MLFLEAPVGV GFSYTNNSMD LQKLGDEVTA SDSLAFLINW FMKFPEFRSS EFYISGESYA GHYVPQLAEV
201: IYDRNKKVTK DSSINLKGFM IGNAVINEAT DMAGLVDYAW SHAIISDEVH TSIHGSCSFE EDTTNKTEQC YNNFKGFMDA YNDIDIYSIY TPVCLSSLLS
301: SSPRKPKIVV SPRLLTFDDL WDKFPAGYDP CTESYAENYF NRKDVQVALH ANVTNLPYPY SPCSGVIKRW SDAPSTMIPI IQKLLTGGLR IWIYSGDTDG
401: RVPVTSTRYS IKKMGLKVES PWRSWFHKSQ VAGWVETYAG GLNFVTVRGA GHQVPALAPA QSLTLFSHFI SSVPLPSKRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)