AT5G08250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.987 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Cytochrome P450 superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cytochrome P450 superfamily protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily B, polypeptide 1 (TAIR:AT5G23190.1); Has 27212 Blast hits to 27118 proteins in 1435 species: Archae - 44; Bacteria - 2429; Metazoa - 9998; Fungi - 5788; Plants - 7920; Viruses - 3; Other Eukaryotes - 1030 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:2653766..2655595 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56589.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.43 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPVWPLVGML PSLISAVRSN IYEWLSDVLI SQNGTFRFRG PWFSTLNCVV TCDPRNVEHL LKTRFSIYPK GSYFRETMQD LLGDGIFNTD DGTWQRQRKA 101: ASVEFHSAKF RQLTSQSLHE LVHNRLLPVL ETSGKIDLQD ILLRLTFDNV CMIAFGVDPG CLSPKLPEIP FAKAFEDATE ATVVRFVMPK FVWKLMRSLN 201: LGTEKKLKES INGVDDFAEE VIRTRKKEMS LETEIAKRPD LLTIFMGLRD ENGQKFSDKF LRDICVNFIL AGRDTSSVAL SWFFWLIEKN PEVEEKIMMG 301: ICKILEQRVD HGDTKKNMEY EPVFRPEEIK KMDYLQAALS ETLRLYPSVP VDHKEVLEDD VFPDGTKLKK GEKVIYAIYA MGRMETIWGK DCREFKPERW 401: LRDGRYMSES AYKFTAFNGG PRLCLGKDFA YYQMRYVAAA IIYRYKVRVD DKGGHKVEPK MALTMYMKHG LKVNMVKRSV SEIDHYYC |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)