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AT5G08240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.956
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6E9eggNOG:ENOG410ZH4VEMBL:AK117176EMBL:AL357612EMBL:BT026353EMBL:CP002688EnsemblPlants:AT5G08240
EnsemblPlants:AT5G08240.1entrez:830720GeneID:830720GO:GO:0016021Gramene:AT5G08240.1hmmpanther:PTHR34379hmmpanther:PTHR34379:SF1
HOGENOM:HOG000152999KEGG:ath:AT5G08240OMA:LGRQNRVPhylomeDB:Q9LEY3PIR:T50509Proteomes:UP000006548RefSeq:NP_196441.1
STRING:3702.AT5G08240.1TAIR:AT5G08240TMHMM:TMhelixUniGene:At.32606UniGene:At.67746UniProt:Q9LEY3
Coordinates (TAIR10) chr5:-:2651382..2652336
Molecular Weight (calculated) 29332.70 Da
IEP (calculated) 10.65
GRAVY (calculated) -0.68
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTEKRVRE GLGSSSYFLG CFGFSRKIYS DKPMVTKGDG GEKKKMKKKR IPRWFLCSKF RLKNSEIKPS PIEETEKPTS RVEDETDDKQ KPLSVIRRIT
101: DRKNIPVDDK AMNQETKETK PKDLRDITPD RSKPIEPLGS FKEDTCTERI SSISSRYGKP DLKPTRSRNG SRVKPFDPVI GISIIILTLM IMLVWGRLCA
201: ILCTSAWCYV LPRVRDAAAL AKRKRNGSAS VPDLNSESYK RKVVLDGFLG RQNRVSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)