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AT5G08130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational
Description (TAIR10)
BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1); Has 2460 Blast hits to 2449 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 308; Fungi - 82; Plants - 2059; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVMPeggNOG:ENOG411216ZEMBL:AB493742EnsemblPlants:AT5G08130
EnsemblPlants:AT5G08130.1entrez:830708ExpressionAtlas:C0SVN9Gene3D:4.10.280.10
GeneID:830708Gramene:AT5G08130.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF153
HOGENOM:HOG000070523InterPro:IPR011598PaxDb:C0SVN9Pfam:PF00010
Pfscan:PS50888PRIDE:C0SVN9PROSITE:PS50888ProteinModelPortal:C0SVN9
RefSeq:NP_196430.2SMART:SM00353SMR:C0SVN9STRING:3702.AT5G08130.5
SUPFAM:SSF47459TAIR:AT5G08130tair10-symbols:BIM1UniGene:At.20960
UniGene:At.67940UniProt:C0SVN9
Coordinates (TAIR10) chr5:-:2606655..2608652
Molecular Weight (calculated) 45547.80 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.81
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MMFNANERNV LDENSNSNCS SYAAASSGFT LWDESASGKK GQTRKENSVG ERVNMRADVA ATVGQWPVAE RRSQSLTNNH MSGFSSLSSS QGSVLKSQSF
101: MDMIRSAKGS SQEDDLDDEE DFIMKKESSS TSQSHRVDLR VKADVRGSPN DQKLNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVI
201: EYIQFLQEKA DKYVTSYQGW NHEPAKLLNW QSNNNQQLVP EGVAFAPKLE EEKNNIPVSV LATAQGVVID HPTTATTSPF PLSIQSNSFF SPVIAGNPVP
301: QFHARVASSE AVEPSPSSRS QKEEEDEEVL EGNIRISSVY SQGLVKTLRE ALENSGVDLT KASISVEIEL AKQSSSSSFK DHEVREPVSR TRNDNVKQTR
401: KPKRLKTGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)