AT5G08110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin supergroup (InterPro:IPR019955), Protein of unknown function DUF1998 (InterPro:IPR018973), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 14986 Blast hits to 14312 proteins in 2354 species: Archae - 833; Bacteria - 9982; Metazoa - 976; Fungi - 914; Plants - 633; Viruses - 5; Other Eukaryotes - 1643 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2594854..2600114 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126467.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1141 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MENERRSGGG DSVPISVRSI NGESTTVQVS SDGTIRDLKK ALKSCFPPAS SSSNFHLYIK GEKLKLDTRV AAITINDGDI LGLFPFKKKE LRQTPKPDLS 0101: KPSSLSSRTS TMKDENAKRA EDHCVGEKRK RDEEACPYGF FNDDLESECK DAFKGQNTEK LAEVLKSRNC LTSPGSTKCL MSWDSSSSLC SCPDWESLSR 0201: LAMSGVRVRI QDVKNLSVIC PKVITDDYEA VNYENAIVIA DYLEMDEKSG RKKIPLAKLF SAMKKREASF KSDFWESIRS LLNKNTGESG IAISLEGLLK 0301: FASEGRADGG NEARQAGKGT CPTSGSRKFQ TLCHATNSLL PSEMVEHLRN GIGSKGQVVH VEVIKARKSA YVEMSDKLSE TTKSALKRIG LNTLYSHQAE 0401: AISAALAGKN VAVATMTSSG KSLCYNVPVF EELCKDTNSC ALYLFPTKAL AQDQLRALSD LIKGFEASIN MGVYDGDTPY KDRTRLRSNA RLLITNPDML 0501: HISILRRHKE QFSRILSNLR YIVIDEAHIY KGPFGCHMAL ILRRLRRLCS HVYGVNPSFI FCTATSANPR EHCMELANLS ELELVTIDGS PSSEKLFVLW 0601: NPSAPPTSKS EKSSKVVSSS EAAADKPSGA AVDTLSGPAS EVSHLFAEMV QHGLRCIAFC PSRKLCELVL CLTREILAET APHLVEAITS YRGGYIAEDR 0701: RKIESDLFGG KLCGIAATNA LELGIDVGHI DVTLHLGFPG SIASLWQQAG RSGRRQKPSL AVYVAFLGPL DQYYMSFPDK LFGSPIECCH IDSQNKHVLM 0801: QHLACAALEH PLSLQYDQQH FGSGLSDPLA ELRNKGFLSF DPSRDSSSRI WNYIGREKNP ARIVSIRAIE TVRYRVMEKK SKDVLDEIEE SKAFFHVYEG 0901: AIYMNQGRNY LVTSLDIKEK VALCELVNVD YYTRTRDYTD IKVTGGDTAY PVKAPKKPTP QTHACRVTTK WFGFLRIRRR NNEVIDDVEL SLPSYTYQSQ 1001: AVWIQVPMSV KLAVETANLP FRAGLHAACH ALVNVVPTRV TCNYSDIAPE CPNPQEQRYF PARILVYDRH PGGTGISAKI CPLFFELLKD ARDLLRSCEK 1101: CPPETGCPKC AQTFGCRGYN ELLHKKAAIM IMQGVLDAKE D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)