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AT5G08080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 132
Curator
Summary (TAIR10)
member of SYP13 Gene Family
Computational
Description (TAIR10)
syntaxin of plants 132 (SYP132); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 131 (TAIR:AT3G03800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15980EMBL:AL357612EMBL:AY063836EMBL:AY117244EMBL:CP002688EnsemblPlants:AT5G08080EnsemblPlants:AT5G08080.1
entrez:830702ExpressionAtlas:Q8VZU2GeneID:830702Genevisible:Q8VZU2GO:GO:0005622GO:GO:0006886GO:GO:0016021
GO:GO:0016192GO:GO:0061025hmmpanther:PTHR19957hmmpanther:PTHR19957:SF131HOGENOM:HOG000238904InParanoid:Q8VZU2IntAct:Q8VZU2
InterPro:IPR000727InterPro:IPR006011InterPro:IPR006012InterPro:IPR010989iPTMnet:Q8VZU2ncoils:CoilPfam:PF00804
Pfam:PF05739Pfam:Q8VZU2Pfscan:PS50192PhylomeDB:Q8VZU2PIR:T50493PRIDE:Q8VZU2PRO:PR:Q8VZU2
PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q8VZU2Proteomes:UP000006548RefSeq:NP_568187.1scanprosite:PS00914SMART:SM00397
SMART:SM00503SMR:Q8VZU2SUPFAM:SSF47661SwissPalm:Q8VZU2TAIR:AT5G08080tair10-symbols:ATSYP132tair10-symbols:SYP132
TMHMM:TMhelixUniGene:At.27182UniProt:Q8VZU2
Coordinates (TAIR10) chr5:+:2588532..2591106
Molecular Weight (calculated) 34227.10 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.56
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)