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AT5G08050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1118)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1118 (InterPro:IPR009500), Uncharacterised conserved protein UCP022207 (InterPro:IPR016801); Has 78 Blast hits to 78 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYD3eggNOG:ENOG4111Z0NEMBL:AL133421EMBL:CP002688EnsemblPlants:AT5G08050EnsemblPlants:AT5G08050.1entrez:830699
GeneID:830699GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009658GO:GO:0016021
GO:GO:0045893GO:GO:0080167Gramene:AT5G08050.1hmmpanther:PTHR31425InterPro:IPR009500InterPro:IPR016801KEGG:ath:AT5G08050
OMA:MAAKLICPfam:PF06549PhylomeDB:Q9SD79PIR:T45630PIRSF:PIRSF022207Proteomes:UP000006548RefSeq:NP_196422.1
STRING:3702.AT5G08050.1TAIR:AT5G08050TMHMM:TMhelixUniGene:At.638UniProt:Q9SD79
Coordinates (TAIR10) chr5:+:2578418..2578964
Molecular Weight (calculated) 16581.30 Da
IEP (calculated) 9.89
GRAVY (calculated) 0.38
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKLICSSL TVHSMANKKP SPSAATRTIT SKKSTATPQV KLLTRVEQLK LLTKAEKAGL LSLAEKSGFS LSTIERLGLL TKAEEFGVLS AATNPETPGT
101: LFTLSLGLLL LGPVFAYVVP EDYTWEVVIQ VLVALLSVLG GSAAFAASGF VSNLQKSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)