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AT5G07960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.360
nucleus 0.334
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:15968eggNOG:ENOG4111WDXeggNOG:KOG3462EMBL:AB005249EMBL:AL133421EMBL:AY086219EMBL:BT004553
EMBL:CP002688EnsemblPlants:AT5G07960EnsemblPlants:AT5G07960.1entrez:830690ExpressionAtlas:Q9SD88GeneID:830690Genevisible:Q9SD88
GO:GO:0016021Gramene:AT5G07960.1hmmpanther:PTHR13193hmmpanther:PTHR13193:SF0HOGENOM:HOG000005922InParanoid:Q9SD88IntAct:Q9SD88
InterPro:IPR005351KEGG:ath:AT5G07960ncoils:CoilOMA:MAMMFAIPANTHER:PTHR13193PaxDb:Q9SD88Pfam:PF03669
Pfam:Q9SD88PhylomeDB:Q9SD88PIR:T45621PRIDE:Q9SD88PRO:PR:Q9SD88ProDom:PD073147Proteomes:UP000006548
RefSeq:NP_196413.1STRING:3702.AT5G07960.1TAIR:AT5G07960TMHMM:TMhelixUniGene:At.630UniProt:Q0WU11UniProt:Q9SD88
Coordinates (TAIR10) chr5:+:2542350..2543253
Molecular Weight (calculated) 11744.40 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.08
Length 107 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHSHGNASS VNDPRQPSAA KPYIPRPVAP EDLPVDYSGF IAVILGVSGV MFRYKICSWL AIIFCAQSLA NMRNLENDLK QISMAMMFAI MGLVTNYLGP
101: NRPATKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)