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AT5G07950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH1ZeggNOG:ENOG4111NV9EMBL:AY087997EMBL:CP002688EnsemblPlants:AT5G07950EnsemblPlants:AT5G07950.1entrez:830689
GeneID:830689Gramene:AT5G07950.1hmmpanther:PTHR15827HOGENOM:HOG000029726KEGG:ath:AT5G07950OMA:CSLYSMEPhylomeDB:Q8LA67
Proteomes:UP000006548RefSeq:NP_568186.1TAIR:AT5G07950UniGene:At.48995UniGene:At.70317UniProt:Q8LA67
Coordinates (TAIR10) chr5:-:2540530..2542047
Molecular Weight (calculated) 34061.90 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.18
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISQFPPPA SPSPASSSRS LASSSPSPGS FSSSMRLWRP AAQRNLRNQW SNLSNCRQQW IVACSAGRSH ATLLVNSYLS QKYMPMMELG VLSDMFDIDK
101: KALKKLFTQQ SSYRIKLLSS YKEMVAVVVE MVNASRSLRC YTKLSTGSLI QFSGTKEDSN DAGDCGGIPV FNFWNVSAFE KMAEELVEMF KREVMLKRLL
201: IMELISLSTE VPQPINNSWS DELYHGEFDH LTKCSLYSME VAKPVLPRVK DYNIGSSSIS HTNQPTAEIL QIYLTTWLAE VNIDTHRVDE ILALVGEEIR
301: VTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)