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AT5G07900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:21296373 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:830684eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AB005249
EMBL:AF370295EMBL:AL133421EMBL:AY063042EMBL:AY086199
EMBL:CP002688EnsemblPlants:AT5G07900EnsemblPlants:AT5G07900.1entrez:830684
GeneID:830684GO:GO:0003690GO:GO:0005739GO:GO:0006355
GO:GO:0016020Gramene:AT5G07900.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF28
HOGENOM:HOG000093133InterPro:IPR003690KEGG:ath:AT5G07900KO:K15032
OMA:EVYQRWGPfam:PF02536PhylomeDB:Q9SD94PIR:T45615
Proteomes:UP000006548RefSeq:NP_568185.1SMART:SM00733STRING:3702.AT5G07900.1
TAIR:AT5G07900UniGene:At.32655UniGene:At.626UniProt:Q9SD94
Coordinates (TAIR10) chr5:+:2520188..2521405
Molecular Weight (calculated) 45848.30 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.01
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVAIPQATS LTNLVFLTKL IPRGSFTTIL PKHHRKPIFV FSLQTQFSSP VTTLTSKNPK DDEQQQKLSF TLNYLIDSCG LSPDSATVAS RKLLLDSPER
101: PNTVLNLLRD HGFTTAQISS LVKKRPVLLL ANAESVLLPK LSFFLSIGVS KSLLARTLAS DPTILTRSLV NQLIPSYNFL KSVLDSDEKI VAALRRTTWV
201: FLEDHTKNLV PNINYMAETG VPEKCIKLLL THFPEAVMQK NHEFQAIAKQ AQEMGFNPQK STFVLAIHAL SGKGNKSIWD KCFEVYQRWG WSEDDIMCAF
301: KKHPHCMMLS ERKINRTMEY FVNEMNMAPR SIAQCPVVLF FSLEKRIIPR CSVTKVLVSN GLVKEDWSLT SLLVPVEKVF LEKLVIKYEE ELPELMNLYL
401: GCTKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)